KEGG   Cyclopterus lumpus (lumpfish): 117746001
Entry
117746001         CDS       T09199                                 
Symbol
lig4
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    117746001 (lig4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:clum03400]
    117746001 (lig4)
Enzymes [BR:clum01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     117746001 (lig4)
DNA repair and recombination proteins [BR:clum03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     117746001 (lig4)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV BRCT_2 DNA_ligase_A_C BRCT RNA_ligase Porin_O_P
Other DBs
NCBI-GeneID: 117746001
NCBI-ProteinID: XP_034410620
Ensembl: ENSCLMG00005003307
LinkDB
Position
2:6799501..6803609
AA seq 910 aa
MEGTTNSDAAGQPFVAAQVPFLHLCTTLEKIQKSKLRPEKSKILGDFIESWRKFHSALHK
DDPKTPDSFYSSMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGTLSIREVNDFLDTVAINNAGKKKDLVKKSLLHLI
TRSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAAELYNVNTDLNKVCQQLHSPSVSL
SEVSIGLFSAFKPMLAGVANIRNVEKQMGNGLFYIQTKLDGERIQLHKDGDVYKYYSRNA
FEYTQQFGGSPLQGSLTPYIHNVFNGHVVNCILDGEMMAYNPTTETFMQKGNKFDIKRLM
DDSELQTCFCVFDVLLVNDQKLGREMLKKRYETLQTVFTPVKGRMHMVPKADARTVQEVV
DALNDAIDGREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCGVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVIIQVRAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCMT
LAELDQFRGRASGKLASRHLHIDGDEPQKKKRKLPVKPKKVVGIIGHFKPQDLSGVTKET
DMFDDVEFCILNGTEDHPKAELEKDVARCGGILVQNPGRDTYCVIAGVENMRVKNLVSSD
QHDVVWASWLLDCLDQKEVVPWQPRHMIHMSPSTREHFAKEYDGYGDSYFADTDEQQLRE
VFGRMRGTDASAAVSAGQVEQRYGWEDLSTSMFRPFQVYMDGYADIGDPETALAATCLDI
RALEFRYHGGMVMQTLEEGVSHVIITEETRLLCLRTLRRSFRKKFKIVRDSWVMDSIKTG
HLMNDTDYLV
NT seq 2733 nt   +upstreamnt  +downstreamnt
atggaggggactaccaatagcgatgctgcaggtcagccctttgtggctgctcaggttcct
ttccttcacctttgtaccaccttagagaagatccagaagtctaaactccgaccagagaaa
tccaagatcctcggggatttcattgagtcatggaggaagtttcactctgccctccacaaa
gacgaccccaaaacacccgactctttctactcttctatgcgcctcatcgtcccctccttc
gaacgagagcgaatggcgtacggcatcaaagagagcatgttagctaaactctacattgac
gtgctgggcctcccaaagaatggcccggaagccaacaaactgttaaactaccgcgctccg
actacatcccaaggagaagctggagactttgccggcatggcgtactttgtgctgaaaaaa
cggtgcaccagccaaggaaccctcagcataagagaagtcaatgacttcctggacacggtg
gccatcaacaacgcgggtaagaagaaggatctcgtgaagaagagcctcctgcacctcatt
actcggagctcggctctcgagcaaaaatggctcataaggatgatcctgaaggacatgaag
ctcggcatcagcaaagaaacggtcctccaggtcttccacccggatgcggccgagctctac
aacgtcaacacagacttgaacaaggtgtgccagcagctccacagcccctccgtgtcctta
agcgaagtctccatcgggctcttctctgctttcaagccgatgttggcgggtgtggcgaac
atccgcaacgtggagaaacagatgggaaacggccttttttacattcagaccaagctggac
ggggagcgcatacaactgcacaaagacggagacgtgtacaagtactacagcagaaacgct
tttgaatacacccaacagtttggagggtccccgttgcagggctccctgacgccttacatc
cacaatgttttcaacggccacgtcgtgaactgcatcctcgacggggagatgatggcgtac
aacccgaccacggagacattcatgcagaaagggaacaagtttgacatcaagagactcatg
gacgactctgagctgcagacgtgcttctgtgtgtttgacgtgttgctggtcaatgaccag
aagctcggcagggaaatgctgaagaagcgctacgagacccttcaaaccgtctttacgcca
gtcaaggggcgaatgcacatggtgccaaaggctgacgccaggaccgtgcaggaggtggtg
gacgccctgaacgacgccattgatggcagagaggaggggatcatggtgaaggatcccatg
tccatctacaaacctgacaagcggggggagggatggctgaaaataaagcctgaatacgtg
gatggcttgatggatgagcttgacctgctgattgtcggtggctactgggggaaagggagg
cggggcggaatgatgtcccatttcttatgcggcgtcgccgaagctccgaagcccggtgag
aaaccatccgtttttcacacactctgccgcatcggctctggctacaccatgaaggagttg
tatgaccttggtctaaagctggccaagcactggaaagtctatcggaagaatgacccgcca
gcatccatcttgtgtggaacagagaagccagaggtctacatcgagccctgcaactcggtc
atcatccaggtcagggcggccgaaatagtcggcagcgacatgtataaaaccaactgcacc
ctgcgcttccccaggattgagaagatccgcgaggacaaggagtggcaccagtgcatgacc
ctggcagagctggatcagttccgcggcagggcatccgggaagctcgcctcgcggcacctt
cacatcgatggggacgaaccgcaaaagaagaagcgcaagctgccggttaaacccaagaag
gtggtcgggatcatcggccacttcaagccccaggacctctccggggtcaccaaggagacg
gatatgtttgatgatgtggagttctgtatcctgaatggcacagaggaccaccccaaggcg
gagcttgaaaaggacgtggccaggtgtggcggtatcttggttcaaaacccgggacgggac
acctactgcgtgattgccggcgtggagaacatgcgcgtgaagaacctggtctcgtccgac
cagcacgacgtggtgtgggcctcctggctgctggactgcctggaccagaaggaagtggtc
ccatggcaaccacgccacatgatccacatgtcgccctccaccagggagcacttcgccaag
gagtacgacggctacggcgacagctactttgcggacacggacgagcagcagctgcgggag
gtgttcgggcggatgcgcggcacggacgcgtccgcggcggtgagcgccggccaggtggag
cagcggtacggctgggaggacctttccaccagcatgttcagacccttccaggtttacatg
gacggctacgccgacataggagaccctgaaaccgctttagctgccacctgtttggacatc
agggctctggagtttcgctaccacggaggtatggtgatgcagaccttagaggaaggggtc
tctcatgtcattatcacagaggagaccagacttctctgtttaaggactctgagacgcagc
tttaggaagaaatttaagattgtaagagactcatgggtgatggattcaatcaaaacaggc
cacctgatgaacgacactgactacttagtttga

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