Cyclopterus lumpus (lumpfish): 117746001
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Entry
117746001 CDS
T09199
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117746001 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clum03400
]
117746001 (lig4)
Enzymes [BR:
clum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117746001 (lig4)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
117746001 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
Porin_O_P
Motif
Other DBs
NCBI-GeneID:
117746001
NCBI-ProteinID:
XP_034410620
Ensembl:
ENSCLMG00005003307
LinkDB
All DBs
Position
2:6799501..6803609
Genome browser
AA seq
910 aa
AA seq
DB search
MEGTTNSDAAGQPFVAAQVPFLHLCTTLEKIQKSKLRPEKSKILGDFIESWRKFHSALHK
DDPKTPDSFYSSMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGTLSIREVNDFLDTVAINNAGKKKDLVKKSLLHLI
TRSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAAELYNVNTDLNKVCQQLHSPSVSL
SEVSIGLFSAFKPMLAGVANIRNVEKQMGNGLFYIQTKLDGERIQLHKDGDVYKYYSRNA
FEYTQQFGGSPLQGSLTPYIHNVFNGHVVNCILDGEMMAYNPTTETFMQKGNKFDIKRLM
DDSELQTCFCVFDVLLVNDQKLGREMLKKRYETLQTVFTPVKGRMHMVPKADARTVQEVV
DALNDAIDGREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCGVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVIIQVRAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCMT
LAELDQFRGRASGKLASRHLHIDGDEPQKKKRKLPVKPKKVVGIIGHFKPQDLSGVTKET
DMFDDVEFCILNGTEDHPKAELEKDVARCGGILVQNPGRDTYCVIAGVENMRVKNLVSSD
QHDVVWASWLLDCLDQKEVVPWQPRHMIHMSPSTREHFAKEYDGYGDSYFADTDEQQLRE
VFGRMRGTDASAAVSAGQVEQRYGWEDLSTSMFRPFQVYMDGYADIGDPETALAATCLDI
RALEFRYHGGMVMQTLEEGVSHVIITEETRLLCLRTLRRSFRKKFKIVRDSWVMDSIKTG
HLMNDTDYLV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggaggggactaccaatagcgatgctgcaggtcagccctttgtggctgctcaggttcct
ttccttcacctttgtaccaccttagagaagatccagaagtctaaactccgaccagagaaa
tccaagatcctcggggatttcattgagtcatggaggaagtttcactctgccctccacaaa
gacgaccccaaaacacccgactctttctactcttctatgcgcctcatcgtcccctccttc
gaacgagagcgaatggcgtacggcatcaaagagagcatgttagctaaactctacattgac
gtgctgggcctcccaaagaatggcccggaagccaacaaactgttaaactaccgcgctccg
actacatcccaaggagaagctggagactttgccggcatggcgtactttgtgctgaaaaaa
cggtgcaccagccaaggaaccctcagcataagagaagtcaatgacttcctggacacggtg
gccatcaacaacgcgggtaagaagaaggatctcgtgaagaagagcctcctgcacctcatt
actcggagctcggctctcgagcaaaaatggctcataaggatgatcctgaaggacatgaag
ctcggcatcagcaaagaaacggtcctccaggtcttccacccggatgcggccgagctctac
aacgtcaacacagacttgaacaaggtgtgccagcagctccacagcccctccgtgtcctta
agcgaagtctccatcgggctcttctctgctttcaagccgatgttggcgggtgtggcgaac
atccgcaacgtggagaaacagatgggaaacggccttttttacattcagaccaagctggac
ggggagcgcatacaactgcacaaagacggagacgtgtacaagtactacagcagaaacgct
tttgaatacacccaacagtttggagggtccccgttgcagggctccctgacgccttacatc
cacaatgttttcaacggccacgtcgtgaactgcatcctcgacggggagatgatggcgtac
aacccgaccacggagacattcatgcagaaagggaacaagtttgacatcaagagactcatg
gacgactctgagctgcagacgtgcttctgtgtgtttgacgtgttgctggtcaatgaccag
aagctcggcagggaaatgctgaagaagcgctacgagacccttcaaaccgtctttacgcca
gtcaaggggcgaatgcacatggtgccaaaggctgacgccaggaccgtgcaggaggtggtg
gacgccctgaacgacgccattgatggcagagaggaggggatcatggtgaaggatcccatg
tccatctacaaacctgacaagcggggggagggatggctgaaaataaagcctgaatacgtg
gatggcttgatggatgagcttgacctgctgattgtcggtggctactgggggaaagggagg
cggggcggaatgatgtcccatttcttatgcggcgtcgccgaagctccgaagcccggtgag
aaaccatccgtttttcacacactctgccgcatcggctctggctacaccatgaaggagttg
tatgaccttggtctaaagctggccaagcactggaaagtctatcggaagaatgacccgcca
gcatccatcttgtgtggaacagagaagccagaggtctacatcgagccctgcaactcggtc
atcatccaggtcagggcggccgaaatagtcggcagcgacatgtataaaaccaactgcacc
ctgcgcttccccaggattgagaagatccgcgaggacaaggagtggcaccagtgcatgacc
ctggcagagctggatcagttccgcggcagggcatccgggaagctcgcctcgcggcacctt
cacatcgatggggacgaaccgcaaaagaagaagcgcaagctgccggttaaacccaagaag
gtggtcgggatcatcggccacttcaagccccaggacctctccggggtcaccaaggagacg
gatatgtttgatgatgtggagttctgtatcctgaatggcacagaggaccaccccaaggcg
gagcttgaaaaggacgtggccaggtgtggcggtatcttggttcaaaacccgggacgggac
acctactgcgtgattgccggcgtggagaacatgcgcgtgaagaacctggtctcgtccgac
cagcacgacgtggtgtgggcctcctggctgctggactgcctggaccagaaggaagtggtc
ccatggcaaccacgccacatgatccacatgtcgccctccaccagggagcacttcgccaag
gagtacgacggctacggcgacagctactttgcggacacggacgagcagcagctgcgggag
gtgttcgggcggatgcgcggcacggacgcgtccgcggcggtgagcgccggccaggtggag
cagcggtacggctgggaggacctttccaccagcatgttcagacccttccaggtttacatg
gacggctacgccgacataggagaccctgaaaccgctttagctgccacctgtttggacatc
agggctctggagtttcgctaccacggaggtatggtgatgcagaccttagaggaaggggtc
tctcatgtcattatcacagaggagaccagacttctctgtttaaggactctgagacgcagc
tttaggaagaaatttaagattgtaagagactcatgggtgatggattcaatcaaaacaggc
cacctgatgaacgacactgactacttagtttga
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