Cyclopterus lumpus (lumpfish): 117746118
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Entry
117746118 CDS
T09199
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like
KO
K12006
tripartite motif-containing protein 16
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117746118
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117746118
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-B_box
zf-RING_UBOX
SPRY
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
U-box
zf-RING_5
zf-RING_6
zf-RING_10
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
117746118
NCBI-ProteinID:
XP_034410879
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All DBs
Position
17:19242812..19244485
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AA seq
557 aa
AA seq
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MGRKRIKLDKEIWSCSMCLDLLKDPVTIPCGHNYCMSCIKAHWDKEDEKKLHSCPQCRQT
FTPRPVLVKNTMLTDLVEELKKTGLQAAPADHCYAGPEDVACDVCTGRRRKAFKSCLVCL
ASYCEKHLQRHYDVPPLKNHKLVEPSNKLQENICSLHDEVMKIFCRTDQQCICYLCLMDE
HKGHDTVSAAAERTERQRELEGSRLNIQQRIQDREKDVKLLHQEVEAINLSADETVEISE
KIFTELIRLMARRRSRVKQQVRSQQRTEVSRVKELQEKLEQEITELKRNDAELQKLSHTE
DLNQFLLNYPSLSPFSESTDSFSINIRPLSFEDVTAAVSEIRDKLLDVLREKWTNVSLMP
TEVNVLLSQPEPKTRDGFLKYSRELTLDPNTAHPWLSLSDGNRKATLMSEQQSYSSHPDR
FTECLQVLSRESLTGRCYWEVEWRGEGVIVAVAYKNISRKGTGEECIFGINNKSWALTCV
KNGYILFHNKVHTPASGPQSSIVGVYLDHNAGILSFYSVSETMTLLHRVQTTFTRPLYAG
LWLLYSFGDTVELCKRQ
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgaaaaagaattaagctggacaaggaaatctggtcttgttcgatgtgtctggat
ctactgaaggatccggtgactattccctgtgggcacaactactgcatgagctgtattaaa
gcccactgggataaagaggatgagaagaaactccacagctgccctcagtgtaggcagacc
ttcacaccgaggcctgtcctggtgaaaaacaccatgttaacagatttagtggaggagctg
aagaagactggactccaagctgctcctgctgatcactgctatgctggacctgaagatgtg
gcctgtgatgtctgcactgggaggagacggaaggccttcaagtcctgtctggtgtgtctg
gcttcttactgtgagaaacaccttcagcgtcattatgatgtacctccattaaagaatcac
aagctggtggagccctccaacaagctccaggagaacatctgctctcttcacgatgaggtg
atgaagattttctgccgtactgatcagcagtgtatctgttatctctgcttaatggatgaa
cacaaaggccacgacacagtctcagctgcagcagaaaggaccgagaggcagagagagctg
gaggggagtcgactaaacatccagcagagaatccaggacagagagaaagatgtgaagctg
ctccatcaggaggtggaggccatcaatctctctgctgatgagacagtggagatcagtgag
aagatcttcactgagctgatccgtctcatggcgagaagaagatctcgtgtgaagcagcag
gtcagatctcaacagagaactgaagtgagtcgagtcaaagagcttcaggagaagctggag
caggagatcactgagctgaagaggaacgacgctgagctgcagaagctctcacacacagag
gatctcaaccagtttctactcaactacccctcactgtcaccattcagtgagtctacagac
tcattcagcatcaacatccgtcctctgagctttgaggacgtgacagcggctgtttcagaa
atcagagataaactactggacgtcctgagagagaaatggacaaacgtctcactgatgccg
actgaagtgaatgttttactgtcacaaccagagcccaagaccagagatggattcttaaag
tattcacgggaactcacactggatccaaacacagcacacccatggctgtcattatctgat
gggaacagaaaagctacattaatgagtgaacaacagtcttattctagtcacccagacaga
ttcactgaatgcttacaggtcctgagtagagagagtctgactggacgttgttactgggag
gtggagtggagaggagaaggagttattgtagcagtcgcatacaagaatatcagcagaaaa
gggaccggagaagaatgcatatttggaataaataacaaatcttgggcattaacatgtgtc
aaaaacggttatatcctttttcacaacaaagtccacactcctgcctcaggtcctcagtct
tccattgttggagtgtacctggatcacaatgcaggtattctgtccttctacagcgtctct
gaaaccatgactctcctccacagagtccagaccacattcactcggcctctctatgctgga
ctttggcttctttattcctttggagacactgttgagttgtgtaaacgacaatag
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