Cyclopterus lumpus (lumpfish): 117746223
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Entry
117746223 CDS
T09199
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117746223
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117746223
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
SPRY
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
U-box
zf-RING_5
Prok-RING_4
Gp58
zf-RING_6
FapA
Motif
Other DBs
NCBI-GeneID:
117746223
NCBI-ProteinID:
XP_034411098
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All DBs
Position
17:20892459..20894772
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AA seq
583 aa
AA seq
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MLFGPEVKVSSEEVKLRHSLLPRGEMELKGVHLDRETFSCSICLDLLKDPVTIPCGHSYC
MNCIKAHWDEEDGKKLLSCPQCRQTFTPRPVLLKSTMLADLVEQLKKTGLQAAPADHCYA
GPEDVACDVCTGRRLKAFKSCLVCLVSYCEKHLQRHYDVPQLKKHQLVDPSNQLQENICS
RHNEVMKIFCRTDQQCICYLCSLDEHKGHDTVSAAAERTERQRELEGSRLNIQQRIQDRE
KDLKLLHQEVEAINLSADKTVKDSEKIFTELIRLMENRSSDVKQQVRSQQRTEVSRVKEL
QEKLEQEITELKRNDAELKLLSHTEDLNQLLHHYPSLSPLSGSTDSSSINIRPLRYFEDV
MAAVSGLRDELQDVLREKWTNVSLMLTEVDVLLSHSQAEPTTRDGFLRCSCDITLDPNTA
DTLLLLSDGNRKATVMKEHQSYSSHPDRFTSYSQVLSRESLTGRCYWEVKWRGGGVYVAV
SYKNIMRTGNECVFGYNNKSWALDCDNNSFIFAHNKVQTPVSGPRSSRLGVYLDHRAGIL
SFYSVSETMTLLHRVQTTFTQPLYAGLGFYYSSGDTAEFCKLK
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcggaccagaagtcaaagtctcttctgaggaagtgaaactcagacactcgttg
ttaccgagaggtgaaatggagctcaaaggagttcacctggaccgggagaccttctcttgt
tccatctgtctggatctcctgaaggatccggtgactattccctgtggacacagctactgc
atgaactgtattaaagcccactgggatgaagaggacgggaagaagctcctcagctgccct
cagtgtaggcagaccttcacaccgaggcctgtcctgctgaagagcaccatgttggcagat
ttagtggagcagctgaagaagactggactccaagctgctcctgctgatcactgctatgct
ggacctgaagatgtggcctgtgatgtctgcactgggaggagactgaaggccttcaagtcc
tgtctggtgtgtctggtttcttactgtgagaaacacctccagcgtcattatgatgtacct
caattaaagaaacaccagctggtggacccctccaaccagctccaggagaacatctgctct
cgtcacaatgaggtgatgaagatcttctgccgtactgatcagcagtgtatctgctacctc
tgctctctggatgaacataaaggccacgacaccgtctcagctgcagcagaaaggaccgag
aggcagagagagctggaggggagtcgactaaacatccagcagagaatccaggacagagag
aaagacctgaagctgctccatcaggaggtggaggccatcaacctctctgctgataaaaca
gtgaaggacagtgagaagatcttcactgagctgatccgtctcatggagaacagaagctct
gatgtgaagcagcaggtcagatcccagcagagaactgaagtgagtcgagtcaaagagctt
caggagaagctggagcaggagatcactgagctgaagaggaacgacgctgagctgaagctg
ctctcacacacagaggatctcaaccagcttctccaccactacccctcactgtcaccactc
agtgggtctacagactcatccagcatcaacatccgtcctctgagatactttgaggacgtg
atggcggctgtttcagggctcagagatgaactacaggacgtcctgagagagaagtggaca
aacgtctcactgatgttgactgaagtggatgttttactctctcattcacaagcagagccc
acgaccagagatggattcttaagatgttcatgtgacatcactctggatccaaacacagca
gacacactgctgttattatctgatgggaacagaaaagcaacagttatgaaggaacatcag
tcttattctagtcacccagacaggttcactagttattctcaggtcctgagtagagagagt
ctgactggacgttgttactgggaggtgaagtggagaggaggaggagtttatgtagcagtc
tcatacaagaacatcatgagaacagggaatgaatgtgtgtttggatacaataacaaatct
tgggctttagattgtgacaataacagttttatatttgctcacaacaaagtccaaacccct
gtctctggtcctcggtcctccagactaggagtgtacctggatcacagagcaggtattctg
tccttctacagcgtctctgaaaccatgactctcctccacagagtccagaccacattcact
cagcctctctatgctggacttgggttttattattcatctggagacactgctgagttctgt
aaactcaaatag
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