Cyclopterus lumpus (lumpfish): 117747883
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Entry
117747883 CDS
T09199
Symbol
usp47
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 47
KO
K11857
ubiquitin carboxyl-terminal hydrolase 47 [EC:
3.4.19.12
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
clum01002
]
117747883 (usp47)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117747883 (usp47)
Enzymes [BR:
clum01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
117747883 (usp47)
Peptidases and inhibitors [BR:
clum01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
117747883 (usp47)
Ubiquitin system [BR:
clum04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
117747883 (usp47)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP47_C
UCH
UCH_1
Ubiquitin_2
FAM161A_B
Motif
Other DBs
NCBI-GeneID:
117747883
NCBI-ProteinID:
XP_034413279
Ensembl:
ENSCLMG00005014622
LinkDB
All DBs
Position
3:complement(14246352..14261020)
Genome browser
AA seq
1362 aa
AA seq
DB search
MEMVPNEENQFVPKEIQNAAEEPRVLCIIQDITSAKTINERLTLNLPSSTTLSKLYDDVA
HKAGYVKATFDLAWGNTPDMAPLDHSSTMSLSDSSFEPGGKKNFLQLTDKDGEQPQIASD
EAGTADSSGLDDVSKERFIGPLARDSTAGCSGDYSSPSYSYSSILNKSETGYVGLVNQAM
TCYLNSLLQTLFMTPEFRNALYNWEFEETEEDPVTSIPHQLQRLFVLLQTTKKRAIETTD
VTRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQTEQADLINQLYQGKLKDYVRCLECG
YESWRVDTYLDIPLVIRPFGASQAYGSVEEALQAFIQPETLDGPNQYYCERCNKKCDARK
GLRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMTFPEELDMSPFIDVEDEKSPQTESCT
DSGAENEGSCHSDQMSNDFSTDDCVDEGICLDSTGSTERVLKPKSLPTFELFSVMVHSGS
AAGGHYYACIKSFSDGQWYSFNDQHVSKITQEDIRKTYGGSSGSRGYYSSAFASSTNAYM
LIYRLKDPSRNAKYLVAEDFPEHIKSLVLREKESEEQEKRQREIERNTCKIKLFCMHPVK
MMTESKLEVHKDKTLKEATEMAYKMMELEGVASLDCCRLVKYDEFHEYLERSYEGEEDTP
MGLLLGGIKSSYMFDLLLETRKPEQVFQPYKPGEVMVKVHVVDLKSETIATPISVRAYLN
QTITEFKQLIAQAAGLSAETMRVVLERCYNDLRLLYVPNKTLKAEGFFRSNKVFVESSES
TDHQVAFTESLLWKLLDRHGNTIRLLVLLPEQSPGTLANRTLCQKVGGDSGVPFEGSTGN
RKSVEVIEESTDKLKNLSQQQQGSSTSDSQKSSDASDFEHIESPTQEADSNASLCVAADN
RELENRIRATAGGSSGASSDPDNHFASEERSDSEVNNDRSTSSVDSDILSSSHSSDTLCN
ADSGPIQLANGLDSHSITSSRRSKAHEGKKETWDTAEEDSGTDSEYDDNGKSKAEAQYLY
FRAEPCSQDDSSSDAQKCLVVHVDKRITLAAFKLNLEPYVGVASTQFKVFRVYANNQEFE
SVRLNETLSSFSDDNKITIRLGRALKKGEYRVKVYQLLVNEPEPCKFLVDTVFAKGMTVR
QSKEELLPQLKEQCKLDLSIDSVRLRKKTWKNPGTVFLDYHVYEEDISISSNWEVFLEVL
NEPEKMKSMSQLAILTRRWSPTTMKLGPFQEVILESSSVEELKEKLSEMSNIPLENLEFA
KGRGTFPCDISVLEIHQDLDWNPKVSTLNVWPLYICDDGAVVFYRASTEEPMALSDEERS
ELMKKESSRLLKTGHRVSYSPRKEKALKIYLDGGPVKDSGQD
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggtgcctaacgaggagaaccagttcgtaccgaaagagatccaaaatgcagct
gaggagcccagggtgctgtgtatcatacaggacatcaccagtgcaaagacaatcaatgag
cgtctgaccctcaacctgccttcttccaccaccctctccaaactctatgacgatgttgcc
cacaaagcgggatatgtgaaagccacttttgaccttgcttggggaaatacaccggacatg
gcaccactggaccacagcagtacaatgtccctctcagattctagttttgagcctggtggt
aagaagaatttcctccagctcacagacaaagatggcgagcagccccagattgcatcggat
gaggcgggaacagcagacagcagtggactagatgacgtttccaaggagcggtttattggg
cccctggctagagacagcactgcaggctgcagtggtgactacagcagtccatcttactcc
tactcgtccatcctcaacaaatctgaaacgggttacgtgggcttggtcaaccaagctatg
acctgctatttgaacagtcttctacaaacactgttcatgaccccggagttcagaaatgcg
ctctacaactgggagtttgaggagactgaagaggatccagtcaccagtataccacaccaa
ttgcaaaggctgtttgttctgctgcagactactaagaaacgggcaatcgagaccactgat
gtgacgcggagcttcgggtgggacagcagcgaggcttggcagcagcatgatgtccaggag
ctgtgcagggtcatgtttgatgccctggagcaaaagtggaagcagacagagcaggctgac
ctgatcaaccagctgtaccaggggaagctgaaggattatgtccgttgtctggagtgtggc
tatgagagctggagggttgatacttacctggacattcctcttgtgatcagacccttcgga
gccagccaggcctatggcagtgtggaagaggctttgcaggcattcatccaaccagaaact
ctagatgggcccaaccagtactactgtgaacgctgcaataagaaatgtgacgcccgaaag
ggcctgagatttctgcacttcccttacctgctgacactacagctgaagcggtttgatttt
gactacaccacgatgcatcgcatcaagcttaatgaccgcatgactttccctgaggagctc
gacatgagtccattcatcgatgtggaagatgagaaatcgcctcagacagagagctgcact
gacagcggagcagagaatgaaggcagttgccacagcgaccagatgagcaacgatttctcc
accgatgattgtgtggatgaaggcatatgcttggacagcaccggcagcactgagagggtg
ttgaagccaaagagcttgccaacctttgagctgttctccgtcatggtccattctgggagc
gctgcaggtggtcactactacgcctgcatcaaatccttcagtgatggccagtggtacagc
ttcaacgatcagcacgttagcaagatcacccaagaagatatcaggaagacatacgggggg
tcctcggggagcagaggctattattccagtgcctttgcaagctctacaaatgcatatatg
ctgatttatagattgaaggatccctcaaggaatgcaaagtatttagttgcagaagacttc
ccagagcacataaagagtttggttctgagggagaaagagtctgaagagcaggaaaagcga
cagcgggagattgagcgcaacacttgcaagataaagcttttctgcatgcatcctgtaaag
atgatgacggagagcaagctggaagtacacaaggacaaaactcttaaagaagcaacagaa
atggcctacaagatgatggagctggagggagtagcgtctctggactgctgccgcttggta
aagtacgatgagttccacgagtacctggaacgctcctatgaaggtgaggaggacacaccg
atgggcctgctgcttggaggaatcaagtcctcgtatatgttcgacctcctgctcgagacc
cgcaaaccagagcaagtgttccagccttacaaacctggagaggtgatggtgaaggttcat
gttgtggatctgaagagtgagaccatcgccactccaatcagtgttcgggcgtacttgaac
cagacgatcactgaattcaaacagcttattgcacaggcggcagggctttctgcagaaacc
atgcgtgtcgtcctagagcgctgctataatgacctgcggctcctgtatgttcccaacaag
acactgaaagctgaggggttcttcaggagtaacaaggtttttgtagagagctccgagtcg
acggatcatcaggttgcttttactgagtcactcttgtggaaactgttggatcgtcacggg
aatacgatccggctcttggtcttactccctgagcagtctcctggtaccttggccaacagg
actctttgccaaaaagtaggaggtgactctggtgtgccctttgagggatcaacgggtaac
aggaaatctgtagaggtcattgaggagagcacagacaagttaaagaatctgtctcaacag
cagcaaggctccagcactagtgacagccagaaaagctctgacgccagcgactttgaacat
atcgaatccccgacccaagaggctgactcaaacgcttcgctctgtgtggctgcagacaac
agagaattagagaaccggatcagggccaccgctggtggcagcagcggcgcctcctctgac
cctgacaaccactttgccagtgaggagcgctctgactctgaagtgaacaatgaccgcagc
accagctcagtggacagcgacatcctgagctccagccacagtagtgacacactgtgcaat
gcagacagcgggcccatacagctggctaacggcttggactcgcacagcatcacaagtagc
cgtcgctccaaagcccatgagggcaaaaaagagacctgggacactgctgaggaagactct
ggaacggacagcgagtatgatgacaatgggaagagcaaggcagaggcacagtacctgtac
ttcagagcagagccttgttctcaagacgactcctcatcggatgcacaaaaatgtttagtg
gttcatgtggacaagagaataacgttggcagcatttaaactgaacctggagccgtacgtg
ggagtcgcctccacccagttcaaggtgtttcgtgtatacgccaacaaccaggagtttgag
agcgtacggctcaatgaaacgctctcatcattctccgatgataacaagataactattcga
ttaggaagagcactgaaaaagggtgaatacagagtgaaagtgtatcaactactagtgaat
gaaccagagccctgtaagttccttgtggacacggtgttcgccaagggcatgactgtcaga
cagtctaaagaggagctgctccctcagttgaaagagcagtgcaagcttgacctcagcatt
gacagtgttcgtctcaggaaaaagacatggaagaacccaggcacggtgtttctggactat
catgtctatgaagaagacatcagcatctcctccaactgggaagttttcctggaggttctc
aatgaaccggagaagatgaagtccatgtcgcagctggccatcctgacccggagatggagc
cccactacaatgaagctggggcccttccaggaagttattctggagagcagcagtgtagaa
gaactcaaggagaagcttagtgaaatgagcaatattcctctcgaaaacctggagtttgca
aagggtcggggaacatttccttgtgatatttccgtgttagagatccatcaggatctggac
tggaaccctaaggtgtcgactcttaacgtgtggcctctgtacatctgtgacgacggagct
gtggtattctacagggccagcacagaggaacctatggcgctgtcggacgaggagcgtagt
gagctgatgaagaaggagagcagccgtctgcttaagactggacaccgtgtcagctactct
ccacgcaaggagaaggccctcaagatctacctggacggaggccctgtcaaggactcgggc
caggactga
DBGET
integrated database retrieval system
