Cyclopterus lumpus (lumpfish): 117750995
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Entry
117750995 CDS
T09199
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03013
Nucleocytoplasmic transport
clum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117750995 (upf3a)
03015 mRNA surveillance pathway
117750995 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117750995 (upf3a)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117750995 (upf3a)
mRNA cycle factors
P-body specific factors
117750995 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
117750995
NCBI-ProteinID:
XP_034418373
Ensembl:
ENSCLMG00005017353
LinkDB
All DBs
Position
21:complement(21462043..21467414)
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AA seq
468 aa
AA seq
DB search
MRSEKDQMTAGKEKSVVEIHFRDAPREQESTGAHLKPKEEKKEVFTKVVIRRLPPNLSKE
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRAYVNFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKVGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSDKDIKIKLLKKSDRDDDVDSDQAKDKCDVGETDRCKWEKAGGQTKSK
DPKEKGQPESDKEQREQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGYC
QDRAKKEGHHHHGYSYCPDGGDKLGKEDREDLGNRKERLRNKVSEKDRPAMQLYQPGARN
RKRMSSAGKGYDCTPVGHSPEPGEEHGYEVVAMATGLEKGFEKSKEDQ
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgaccgcgggcaaggagaaaagcgtcgtggagatccac
ttcagagacgccccgagggagcaggagagcactggcgctcacctgaagcccaaagaggag
aagaaggaggtcttcactaaggtggtgatccggaggctcccaccgaacctgtccaaggag
cagctagaggagcagctcagtccgcttccttcctacgactattttgagttctttccggcc
gatcaaagtctttacccccacctgttctccagggcgtatgtcaatttcaaaaaccctgaa
gatatcctcctgttcagagaccgatttgatggctacgtcttcatcgacaacaagggccag
gagtatcctgccgtggtggagtttgcccccttccagaaaatctcaaagaagaagctgaaa
aagaaagatgccaaagtcgggagcattgaagaagacccagagtacaagcggttcttggag
aattactcctgtgatgaggagaagtctatggccaacccggaaactctgctgggagagata
gaggccaagaccagagagctcatagccaaacggacaacgccactgttggagtacatcaaa
aataagaaaatcgagaaacagaggatcagagaggagaagagggaggagaggagaagacgg
gagctggaaaagaaacgacagagggaggaggagaagaggaagcggcgggaggaggagaga
cgcaaacggaaggaggcggagaagcagaagaagttgtccgacaaagacatcaaaatcaag
ctcctgaagaagagtgacagggacgacgacgtggattcagaccaagcgaaggacaaatgt
gacgtcggggagacggacaggtgcaaatgggagaaggcgggaggacaaacaaagtcgaag
gaccccaaagaaaagggtcagcccgagagcgacaaggagcagagagagcagcacggccgc
agacagagagacaaggaccaccggggcaaggacgaggagaggaagcggcagcggcaccac
tacgagtttgacaagttcatgcgccgcaaagacgagaccaaatgggggaagggctactgc
caggaccgagccaagaaggaggggcaccatcaccatggctattcctactgccccgacggg
ggagacaaactggggaaagaggacagggaggacctgggtaacaggaaggaacgcctccga
aacaaggtgagcgagaaggaccgtcccgccatgcagctctatcagcccggcgcacgcaac
aggaagcgcatgagctcagctggcaaaggctacgactgcacccctgtgggccactcccct
gaacccggagaggagcatggctacgaggtggtcgccatggcaacgggcctggagaagggg
tttgagaaaagcaaagaggaccagtga
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