Colletotrichum lupini: CLUP02_00818
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Entry
CLUP02_00818 CDS
T08561
Name
(RefSeq) uncharacterized protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
clup
Colletotrichum lupini
Pathway
clup03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CLUP02_00818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clup03021
]
CLUP02_00818
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_00818
Transcription machinery [BR:
clup03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CLUP02_00818
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CLUP02_00818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFIA_Pcf11
CID
VHS
UBZ_FAAP20
Motif
Other DBs
NCBI-GeneID:
73334874
NCBI-ProteinID:
XP_049135821
LinkDB
All DBs
Position
1:complement(join(2889758..2889844,2889901..2890242,2890296..2890491,2890543..2891381,2891436..2891909,2892037..2892204))
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AA seq
701 aa
AA seq
DB search
MSYESSATEVAEDYRQALEDLTTNVRFEISNLTMIAREQTEHAQVISEVLQDHILKAPAH
KKLPALYVLDSIVKNVGTPYTLFFGAKLYQTFMEAYAAVDGQVRRKMDEMLRTWKEPVPG
SLDKRPVFASEVTAPIESALIKARTSALQAQQGRPAGRGRPAAAPYRETPTPPGMRPGSN
QPMPYGQPPPMPQANGNRPPSAPLPHHPQMAPYAPPPPSYSAQPSAAPGPYQPPPQVPYG
AGLSGPQAAGINKDSLGQDIQKLIDASKLEFAQNPHDHSIQQRLKALLDVQSLLQHQNLP
QDQLVLIKNQVADLAVKVRPFSAQSSTPTATTVPHHPPPPPAAPVVPSGLPPQQAGVTLD
ALLGQGALAALLSRQSATPQLSTPPPPPHASMANRSPPPQRAEPQRQPSAPPATDPMALL
AGLRQAGILRGAAPSATPTPAAPAPVPPPGMPMMPPGFLPPNIASLLASGQLPPIPPLGG
MSGNQLDAAALKQQFQPHLIPSLFEQLGPQCTQCGRRFKTDDEGRKKKMAHMDWHFKAHQ
RLAEAEKRGQHRSWYVDNNDWVKSREAIDVDHVAAADKSSSSPGRGKKEAKPRYIPVPDA
SSGINSKCPICQEKFENKWLETAQEWVWLDTTLVGNRAYHFSCHSEATQARESTPVYTKR
APEPSHGKKRKAEGDQKPFRGKMKKDKDKDTVKWPKAELDY
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgagtcatccgccacagaagtcgctgaggactatcgtcaagctcttgaagac
ttgactaccaatgtgcgattcgaaattagcaatctgacgatgattgcaagagagcagacc
gagcatgcccaagtcatctctgaagtcttgcaggaccatatcttgaaggcgccagcgcac
aagaagctcccagccctctacgtcctcgattcgattgtcaagaatgtcggcactccgtac
acattattcttcggagcaaagctataccagacgtttatggaagcatacgcggctgttgat
ggccaggttcgccgcaagatggatgaaatgctccgcacctggaaggagcctgttcctgga
tctctggacaagcgtccagtctttgcgtcagaagtgacggcacctattgagagcgccctc
atcaaggctcgcacatccgcgcttcaggctcagcaaggacgaccagcaggtcgcggccga
cctgctgctgcaccgtatcgcgaaacaccaacaccgccgggtatgcgacctggctcgaac
cagccgatgccatacggtcaacctccacccatgccacaagcgaatggcaaccgacctccg
agtgcgccgcttccacaccatccgcagatggctccttatgcacctcctccgccatcatac
agtgctcaaccttcggcagctcctggtccctaccaaccccctccgcaggtgccatacgga
gccggactctcaggacctcaggctgctgggataaacaaagactctctgggtcaagatatc
cagaagttgatcgatgcgtcgaagttggagtttgcacagaacccccatgatcatagtatt
caacaaagactcaaggcgttgttggatgtgcagagcttgcttcaacatcagaacttgccc
caggaccagttggtcctcattaagaatcaagtagccgatcttgccgtaaaagtgaggccg
ttctcggcccagagctcaacccctactgctacaactgtccctcatcatccaccgccgcca
cctgcggcgcctgtagtaccatctggcctgcctccgcagcaagctggagtgacgcttgat
gccctcttgggccaaggagctcttgctgctctgttgtcacggcagtcagccacgccacag
ctttcaacgccgccgccccctcctcatgccagcatggcgaaccggtctcctcccccacag
agggccgagccgcaaagacagcccagtgcgccgccggcaacagatcctatggcgttgctg
gccggcttacggcaagccggaatccttcggggagcagctccaagcgcaacaccgacgcca
gcagccccagcaccagtgccccctccagggatgcctatgatgcctcccggattcttgccc
cctaacattgcaagcttgctggcttccggccaactgccgccaattcctccgcttgggggt
atgagcggcaaccagcttgatgcggcggctttgaaacaacaattccaacctcacttaatc
ccgtctctctttgagcagttgggtcctcaatgcacccaatgtggtagacgtttcaagacg
gatgatgagggtaggaagaagaagatggcgcatatggattggcacttcaaggcacaccaa
cgactcgcagaagcagagaaaagaggccagcaccgaagctggtatgtcgataacaatgac
tgggtcaagtcccgagaggccattgatgtcgaccacgttgcggctgcggacaagtcttcg
tctagtcctggccgagggaagaaggaggccaagcctcgatatattcctgtgccagatgca
tccagcgggatcaatagcaaatgtcccatctgccaagagaaatttgagaacaagtggctt
gagactgctcaagaatgggtgtggctggatactacgttggtcggcaatcgagcatatcac
tttagctgtcattcggaagcgacacaagcacgcgaaagcacaccagtctatacgaagaga
gcgcctgagccatcgcacggcaagaagcgcaaagcagagggtgaccaaaaaccgtttcgc
ggaaagatgaagaaggacaaagacaaagataccgtcaaatggcccaaggcggaacttgac
tactga
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