Colletotrichum lupini: CLUP02_05458
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Entry
CLUP02_05458 CDS
T08561
Name
(RefSeq) DEAD/DEAH box helicase
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
clup
Colletotrichum lupini
Pathway
clup03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLUP02_05458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clup03041
]
CLUP02_05458
Enzymes [BR:
clup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLUP02_05458
Spliceosome [BR:
clup03041
]
Complex A
U2 snRNP components
U2 related factors
CLUP02_05458
Complex B
CLUP02_05458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
73339475
NCBI-ProteinID:
XP_049141608
LinkDB
All DBs
Position
3:complement(join(2373630..2376274,2376350..2376785,2376840..2377352))
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AA seq
1197 aa
AA seq
DB search
MARTRDSRSPSPAGSQYARRRKDDDRRDRRDDGGRDYRRRSRSRSPGDVRRHRREREWDD
SDRYQQRRYRDRERDRDSHRRRDRSIDRRDNDRHRDNRRRSRDRFADRDRSLDRRRHRDS
DRDHRPRRDDSRDRARARREGTADSRPRSKRDDSRPRGAAPPEKTSTPGNEAAKPKPAPA
QTEADKKAERLARLEAWKKSRENKANKENEVNPSQTRNLLAEMDKKSVASPAPASPSVAS
PAVASPVVASPAASPAPTLNTSGNASPAVPFAGKFDPKAIAKKSAASHKNTGTNSVLGAL
EGRPEKPTAPVAPITKASALPANRNLSAFGFSKATADSEKLANKRKLDLDEEEGTKRKLT
KLPALPLEADDTPYADQDEDDESDGGNFAETEEEAAAIARAAHERRERELQEAQEESKQD
VDMQDVAPTQTAEPVEEPPVADKMEVVEAEEDDVDPLDAFMADLSDTKAAPGPKASTSTK
KVQEPEAYFSDDEYAFKADDGPNANAALAMAAKRKKKDIPTVDYSKIDLLPIRKDFWVEP
AELAALSEEEVTELRAELDGIKVSGKNVPKPVQKWAQCGLNERTLDVIAGLGYEKPTPIQ
MQSLPILMSGRDVVAVARTGSGKTMAFLLPMFRHIMDQPPIRDTDGPIGLIMTPTRELAV
QIHRDCKPFLKAMGLRAVCAYGGAPIRDQIAELKRGAEIVVCTPGRMIDLLAANQGRVTN
VRRVTYAVLDEADRMFDMGFEPQVMKIFANIRPDRQTIMFSATMPRSIDSLAKKVLKSPV
EITVGGRSIVPANITQIVEVIPETEKFYHLLGLLGELYEKDEDARTLIFVERQEKADDLL
KELMTKGYPCMSIHGGKDQVDRDSTISDFKNGIVPILVATSVAARGLDVKQLKLVVNYDP
PSHHEDMVHRSGRTGRAGNTGTAVTYISEDQENCAPGIAKALEQSGVPVPKRLEEMRKAW
IEKVKAGKAKDNSGFGGKGLDRLDAEREAARLRERKTHKAEGEEDDVKEEKAEDKGKSAV
IDIQSKVSAVVSRAANKPEEAKGKDTPAAGGAGGKPGQPLDMVSAAIRNINERLGKAGQL
RSGQPIDNKGPDAGAYHATLEINDFPQKARWAVTNRTNVAKILEATGVSITTKGTFYPAG
KEVPAGADPKLYILVEGDTEVVVGAAMTELTRLLSEGTVAAATADSRAPASGRYNVV
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggctcggaccagggactcgcgctcaccatcgcctgcaggaagccaatacgcgagacgc
cgcaaagacgatgacaggagggaccgccgtgatgatggaggcagagattaccgtcgtcgc
tcgcggtccaggagccctggcgatgtgagaagacaccgcagagaacgagaatgggacgac
tctgacaggtaccaacagcgacgatatcgagatcgcgagcgcgatcgcgactctcaccgc
cggagagatcgctccatagaccgacgagacaacgaccgccacagagacaatcggaggagg
tctcgcgatcgattcgccgacagagaccgatctctcgacagaaggcggcatcgtgatagc
gacagggaccatcgtccaaggcgagacgactccagggatcgagctcgcgcgaggcgagag
ggaactgctgactcccgtccgcgtagcaagcgcgatgatagccgcccacgcggcgcagcg
cctccagagaaaaccagtacccctggtaatgaggctgctaagcccaagcccgccccagcc
cagactgaagctgacaaaaaggccgaacgactcgccaggctcgaggcctggaagaagagc
agagagaacaaggccaataaagagaatgaggttaatccaagtcagactaggaatctcctc
gcggagatggacaaaaagtccgtggcgtccccggctcccgcttcgccatctgtcgcctcg
cctgctgtcgcatctcccgtagtcgcgtccccggcggcatccccagcgccaacgctcaat
acttctggaaacgcatcaccagctgtgcctttcgcgggcaagtttgaccccaaggccatt
gcgaagaaatcggcagcgtctcacaagaacaccggcacgaatagtgtgctgggcgcgctg
gaaggccggcccgagaagcccacggcacctgttgcaccaatcacgaaggcctcagcactt
cccgccaaccgaaacctgagcgcttttggtttcagcaaagcgactgccgacagtgagaag
ctcgcaaacaagcgcaagctcgatctcgatgaggaggaagggacgaagaggaaactcaca
aagctacccgcacttcccctcgaggctgatgacaccccctacgctgatcaagatgaagac
gatgagtcggacggtggcaactttgccgaaacggaagaagaagctgctgcaattgcccgt
gctgcgcacgaacgacgcgagagagagctgcaggaggcgcaagaagagtccaagcaagat
gtcgacatgcaggatgttgcgccaacgcaaactgctgagccagttgaagagcctccagtc
gccgacaagatggaggtcgtggaagccgaagaggacgatgttgatccgttggacgctttc
atggccgatctgtcggatacaaaagccgcgccgggtcccaaggcaagtacatccacgaag
aaggtccaggagcctgaggcgtacttcagtgacgatgaatacgctttcaaagcagacgat
ggccccaacgccaatgcagctctcgccatggctgcgaaacgcaagaagaaagatattccc
acggtggactacagcaagatagacttactacctattcgtaaggatttctgggtcgaacca
gcggagcttgccgctctcagcgaagaagaggtcaccgaactgcgcgcggagcttgacggc
atcaaagtctcgggcaaaaacgtccctaagccggtacagaagtgggcccagtgcggtctc
aatgagcggacattggacgtcatcgccggccttggctatgaaaagccgacgccgattcag
atgcaatctctgcccattctcatgtcggggcgtgatgttgtcgccgttgccaggactgga
tcaggtaaaacaatggccttcctccttcctatgttccgtcacattatggatcagccgccc
atcagggacaccgacggtcccattggtctcattatgacaccgactcgcgagctggcagtc
cagattcatcgcgattgtaaaccctttctgaaggcaatgggtttgcgggctgtctgtgcc
tatggtggagctcccattagagatcaaatcgccgagctcaagcgcggtgccgaaatcgtc
gtgtgcacgcccggccgcatgattgacctgttggctgccaaccagggccgtgttacgaat
gtgcgtcgcgtcacatacgctgtcctcgacgaggctgatcgcatgttcgacatgggtttc
gagccacaagtcatgaaaatcttcgccaatatccgccctgaccggcaaaccatcatgttc
tccgcaaccatgcctcgcagcattgattccttggccaagaaggtactcaagtctccagtt
gagattaccgtaggaggccgcagtatcgtgcccgcaaacattacgcagattgttgaggtt
attcccgagactgaaaagttctaccatctactaggcctgcttggtgagctttacgaaaag
gatgaggacgcccgtactctaatcttcgtcgaacgtcaggagaaggccgacgaccttctt
aaggaactcatgaccaagggatacccctgcatgtcgatccacggtggtaaagaccaggtc
gatcgtgattctacaatttccgatttcaagaacggtatcgtgccaatcctggtcgcaacg
tctgttgcagcgcgaggtctggacgtcaagcagctcaagttggttgtgaactatgaccca
ccctctcaccatgaggacatggtgcacagatccggacgtacgggaagagcaggtaacact
ggaaccgcagtgacttacatttctgaagaccaggagaattgcgcccctggcatcgcaaag
gctctggagcaaagcggtgttcctgtccctaagcgcctggaagagatgcgtaaagcatgg
atagaaaaggtcaaggcaggcaaagccaaggataactctggctttggtggaaagggtctg
gacagactcgatgccgagcgtgaagctgctcgtcttcgtgagcgcaagactcacaaggcc
gagggcgaagaagatgacgtgaaggaggagaaggctgaggacaagggcaagtctgctgtc
atcgacattcagtccaaggtatcagccgttgtgtcccgtgccgccaacaagcctgaagag
gccaagggcaaggatacaccggctgccggcggcgccggaggcaagccgggacagcctctc
gacatggtcagcgcagccattaggaacatcaacgagcgactcggcaaggccgggcagctt
cggtcaggacagcccatcgacaacaagggccccgatgccggtgcgtaccacgccaccctc
gagatcaacgacttcccgcagaaggccagatgggcggtcacaaacagaacgaacgtggcc
aagattttggaggcaactggtgtgtcgatcacgacaaagggaaccttctatcctgctggc
aaggaagtcccggccggagcggacccgaagctgtacattctcgttgagggtgacacggag
gttgtggttggcgctgctatgaccgagcttacccgacttctcagtgaaggaactgttgcg
gcggctacggccgacagccgtgctcccgcttctggacgttataatgtcgtgtaa
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