Colletotrichum lupini: CLUP02_13278
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Entry
CLUP02_13278 CDS
T08561
Name
(RefSeq) histone deacetylase
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
clup
Colletotrichum lupini
Pathway
clup03082
ATP-dependent chromatin remodeling
clup03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
CLUP02_13278
03083 Polycomb repressive complex
CLUP02_13278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
clup03036
]
CLUP02_13278
Enzymes [BR:
clup01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
CLUP02_13278
Chromosome and associated proteins [BR:
clup03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
CLUP02_13278
HDAC complexes
Sin3A-HDAC complex
CLUP02_13278
BRAF-HDAC complex
CLUP02_13278
REST complex
CLUP02_13278
SHIP complex
CLUP02_13278
MiDAC complex
CLUP02_13278
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
CLUP02_13278
Heterochromatin formation proteins
Other heterochromatin formation proteins
CLUP02_13278
Chromatin remodeling factors
NuRD complex
CLUP02_13278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
73347231
NCBI-ProteinID:
XP_049149367
LinkDB
All DBs
Position
7:join(768400..768673,768728..769269,769327..770337)
Genome browser
AA seq
608 aa
AA seq
DB search
MTQFHTDEYIDFLQKVTPDNMDAYQKEQGKYNVGDDCPVFDGLFEFCGISAGGSMEGAAR
LNRQKCDIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLRFKKRVLYIDIDVHHGDGV
EEAFYTTDRVMTVSFHKYGEYFPGTGELRDIGIGTGKHYAVNFPLRDGIDDTSYKSIFEP
VIEHVMKFYQPEAVVLQCGGDSLSGDRLGCFNLSMEGHANCVGYVKSFGLPTLVLGGGGY
TMRNVARTWAFETGVLVGKHLPKTLPYNEYYEYYAPDFELNVRPSNMENSNSFEYLEKIK
AAVIDNLRHTQPAPSVQMQDVPRQPFGVMTDEEEAELNDMDEDENADDRMTQRRWDQRTR
NEAEFEDSDDEDMDQANGMTRPRNAKKRTFGDYRQAEGEVDSGAPSPVNGAPEGEEAPNA
EPIVDADITLENPAEPEDTSDKSVPEKEAAPEASKEDAVDEDGDVGMEDGADVEGGTTTI
KKEEVEAEPVPVAEKEEKTEKTPSRQPSADPATQPPVAETTETTKATEAAKEPVKETETA
VASKETEAAEANESKPEVAAEEPAAEAKATTPEKEKDTTEKAEAKDAEPEVDKMDVDEKP
AEEEAKKE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgacccagttccacacagacgagtacatcgacttcctccagaaggtaactcctgacaac
atggacgcctatcagaaggaacagggaaaatacaatgtcggagatgattgtcccgtattt
gacggcctatttgagttctgcggcatcagcgctggcggtagcatggagggtgctgcccgt
ctcaatcgtcaaaagtgcgatattgcagtcaactgggccggtggtcttcatcacgccaag
aagagcgaggccagtggtttctgctacgtgaacgacattgtcctcggcattctcgaattg
ctgcgtttcaagaagcgcgtcctctacatcgatatcgacgttcaccatggcgacggtgtt
gaagaagcattctatactaccgaccgagtcatgaccgtttccttccacaaatacggcgag
tacttccctggcactggagagctgcgcgacattggtatcggcaccggcaagcactacgct
gtcaactttcctctccgcgatggtatcgacgacacctcttacaagtcaattttcgagcca
gtcattgagcacgtcatgaaattctatcaacctgaagccgttgtactgcagtgtggtggc
gacagtttgtccggcgaccgcttgggctgcttcaaccttagtatggagggccacgccaac
tgtgttgggtacgtcaaaagcttcggcttgccgaccttggtcctgggtggtggtggatac
accatgcgcaacgtcgctcgcacatgggcgtttgagactggtgttctcgttggcaagcat
cttcccaagacgcttccttacaacgaatactacgaatactatgctcccgactttgaactg
aacgtccgcccatcgaacatggagaactccaacagcttcgagtatctggagaagatcaag
gccgctgtcatcgacaacctgagacatacccagcctgccccctccgtacagatgcaagat
gtgcctcgccaaccctttggtgtcatgacggacgaggaggaagcggagctaaacgatatg
gacgaagacgagaatgccgacgaccgaatgacacagcgccgatgggaccagcgcacccgc
aacgaagccgagttcgaggacagcgatgacgaagatatggatcaggcaaacggcatgacg
cgtcctcggaatgccaagaagcgcaccttcggtgactaccgacaggctgaaggcgaggtc
gacagtggagcgccctcacccgtgaatggtgctcccgagggtgaagaagcccccaacgcc
gagccgattgtggatgccgacattactctcgagaaccccgccgaacccgaagacacatcc
gacaagtcagtcccggagaaggaggccgctcccgaagcctcgaaagaggatgccgtcgat
gaggatggtgatgttggcatggaagatggagcggatgtcgaggggggaacaaccacaatc
aagaaggaggaagtcgaggcagaacccgtcccggtagccgagaaggaagaaaagacggaa
aagacaccttcacgccagccttccgccgatcctgcaactcagccgcccgtcgcagaaacg
acagagacaaccaaagccaccgaggctgccaaggaacctgtcaaggaaacagagacggcg
gtggcgagcaaagagactgaggctgctgaggctaacgagtccaagcccgaggtcgcagcc
gaagaaccagctgctgaagccaaagcaactaccccagaaaaagaaaaggacactaccgag
aaagcagaggccaaggacgctgagcccgaggtagacaagatggacgttgacgaaaagccg
gccgaggaggaagccaaaaaggaatag
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