Columba livia (rock pigeon): 102093808
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Entry
102093808 CDS
T02912
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
clv
Columba livia (rock pigeon)
Pathway
clv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
102093808 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clv03400
]
102093808 (LIG4)
Enzymes [BR:
clv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102093808 (LIG4)
DNA repair and recombination proteins [BR:
clv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
102093808 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
DUF2948
Tox-REase-9
SKA1
Motif
Other DBs
NCBI-GeneID:
102093808
NCBI-ProteinID:
XP_005507867
UniProt:
A0A2I0MSC5
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MASTPALQPSPKKTVASRVPFADLCSTLERIQKCKSRPDKTKYFKDFLDSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDAAKLLNYRTP
AGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDTIANNNAAKNKGLLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGISQQTIFSIFHPDALELHNVTTDLEKVCRQLHDPSVSL
SDVSITLFSAFKPMLAAIADVQQIEKQMNNQIFYIETKLDGERMQLHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNRFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLAHEILTKRYEILSSVFTPLAGRIHVVHKKSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRRDPP
GNILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
STMLEDLRSKAEGKLASKHLHIEEYDEPQEKKRKTVSKVRKIIGIAEQFKAPDLSNVSKV
SNMFEDVEFCVMTGMGKYTKSELESRIAECGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTADTDVAQLK
EVFSRMKDNEVMPSDMIAELEERYSWNSCRLSIFRGNTIYVDCYAVVNEPRTKIQGTTLS
IRALELRFYGAIVVSHLEEGISHVVVGDDRSRVKEMKSLRRTFGIKFKIVSELWVTESVE
EGVLKNENQYLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacacctgcattgcagccttctcctaaaaagacagtggcctctcgtgtgcct
tttgcagatctgtgttctactctggagcgaatacagaagtgtaaatctcgtccagataaa
accaagtacttcaaggatttcctggattcctggagaaagttccatgatgctcttcatcaa
aaagagaaagatgtcacagattctttttatccggcaatgcgacttattcttccacagctg
gaaagagaaaggatggcctatggaattaaagaaacgatgcttgcgaagttgtatattgaa
ctgcttaatttaccaagagatggaaaagatgctgcaaagcttttaaattacaggacacct
gctggctcacgtggagatgctggagattttgcgatgattgcatactttgtgttaaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacacttagatacaata
gctaataacaatgctgctaaaaacaagggtctgttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggcttatccggatgattataaaggatctgaag
cttggtattagtcaacaaactatattttcaatttttcatcctgatgctcttgaattacac
aacgtcacaactgatttggaaaaagtttgcaggcaactgcatgatccctctgtctctctt
agtgatgtttctatcacgttattttctgcctttaaaccaatgcttgctgctattgctgat
gtccagcaaattgagaaacaaatgaataaccagatattctacatagaaactaagctggat
ggtgaacgtatgcagctgcacaaagatggagatgtgtataaatatttttcccgaaatggg
tttgactatactcagcagttcggtgcttccccccttgatggttcgttaacaccatttatt
cataatgtatttaagagcaatatacaaaactgcattcttgatggtgaaatgatggcttac
aatcctgagacgcaaacctttatgcaaaaaggaaacagatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtgtttgacgtattgatggttaacgatcag
aagttggctcatgaaatactgaccaaaaggtatgaaatcttaagtagcgtatttactccc
ctagcaggcaggatacatgttgtacacaaaaaaagcgccagaacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaagggattatggtgaaagatcccatg
tctacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatacgtt
aatgggctgatggatgaactagaccttttaattgtcggtggttactgggggaaaggctct
cgtggtggaatgatgtctcattttctgtgtgctattgcagagacgcctcctccaaatgaa
aaacctaccattttccactctatttgtcgtgttggctctggctatactatgaaggaatta
tacgatctaggtttgaaactggctaaacattggaagccctaccataggagggaccctcct
ggtaatattttatgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagccgagattgttaacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagagaggacaaagaatggtatgagtgcatgact
tcaaccatgttagaagatctcagaagcaaagcagaagggaagctggcatctaaacacctt
catatagaggagtatgatgagccacaagagaagaaaaggaaaactgtatcaaaggtgagg
aagataattggaatagctgagcagttcaaagctcctgatctttctaatgtaagcaaggtt
tcaaatatgtttgaagatgttgagttttgtgttatgacaggaatgggaaaatacacaaag
tctgaactggaaagcaggatagctgaatgtggtggcagcgttgtacagaacccagggcca
gagacttactgtgttattgtaggagctgagaatgtcagagtgaaaaacattattgcttcc
aacaaatacgatgtagtgagggcagagtggcttcttcagtgttttcaaaccaaaatgctt
gtgccttggcaaccagcctttatgattcacatgtctcctgacaccaaagaacattttgct
cgtgagtatgattgttacggagacagctacacggcagacacagatgttgcacaactcaag
gaagtgttctcaagaatgaaagacaatgaggtgatgccttctgacatgatcgcagagtta
gaagaacgttattcgtggaacagctgtcggctcagtatattcagaggaaacactatttat
gtggactgttatgctgttgttaatgagcccagaaccaaaatccagggaactacactgtca
attagagctttggagctccgtttttatggtgcaatagtagtctctcaccttgaagagggc
atctcccatgttgttgtaggagatgatcgttcccgggtaaaagagatgaaatcactcaga
agaacatttgggataaaatttaaaatcgtgtctgagctgtgggtaactgagtcagtggag
gaaggagtcctaaagaatgaaaatcagtacttaatctaa
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