Columba livia (rock pigeon): 102095827
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Entry
102095827 CDS
T02912
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
clv
Columba livia (rock pigeon)
Pathway
clv03013
Nucleocytoplasmic transport
clv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102095827 (UPF1)
03015 mRNA surveillance pathway
102095827 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clv03019
]
102095827 (UPF1)
Enzymes [BR:
clv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102095827 (UPF1)
5.6.2.5 RNA 5'-3' helicase
102095827 (UPF1)
Messenger RNA biogenesis [BR:
clv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102095827 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102095827 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102095827
NCBI-ProteinID:
XP_021147317
LinkDB
All DBs
Position
Unknown
AA seq
1073 aa
AA seq
DB search
MSEGGTRTLALKFHLFHDELRSRLFWLCHLSAELVFQVNGPDGILQNGAVDDNVAKTSQL
LAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNH
LVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSL
KDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLED
LEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNK
KRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSV
GAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQL
PKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLV
CAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQ
LKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDEST
QATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQ
VQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIAS
SGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQ
EVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKAL
SXXXXXXKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGS
VYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPA
AGRGAPKGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPS
QMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagggagggaccaggaccttggctttgaaattccacctcttccatgatgagtta
agaagtcgcctgttttggttgtgtcacttaagcgctgagcttgtgtttcaggtgaacgga
cctgacggcattttgcagaacggagctgtggatgacaacgtggcgaaaaccagccagctc
ctggcagagctcaattttgaagaggatgaagaagacacctattacacaaaggatcttcct
gtgcatgcttgcagttactgtggtatccatgaccctgcttgtgtggtttactgtaacacc
agcaaaaagtggttctgtaacgggcgtggaaatacatctggcagccacatcgttaatcat
cttgtgagagccaagtgcaaagaggtgactctccataaagacggacctctaggagaaacc
gtcttggaatgttataactgcggatgtcgtaatgtgtttctccttggcttcatcccagcc
aaggcagactctgtggtggttttgctgtgcaggcagccatgtgccagtcagagcagttta
aaggatattaattgggacagttcacagtggcagcccctcatccaggatcgctgtttcctt
tcgtggctggtaaagattccatcggaacaggagcagctgagagcacgtcagattacagct
cagcagattaacaaactggaagaactttggaaggaaaatccatctgcaacccttgaggac
ttggaaaagcctggtgttgatgaagaaccacagcatgtcctgctgagatatgaagatgct
tatcaataccaaaatatatttggtcctctagtaaagcttgaggcagactatgacaagaaa
ctcaaggagtctcagacccaggacaacatcactgtcagatgggacctgggcttgaacaag
aagagaattgcttatttcactctgccaaagactgattcagatatgcgtcttatgcaagga
gacgagatctgcttgaggtataaaggagacctggcccctttatggaaaggaattggtcat
gttatcaaagttcctgataattatggtgacgagatcgccattgagctgaggagcagcgtt
ggagcgcctgtggaagttactcacaacttccaagtggattttgtctggaaatctacttcc
tttgacaggatgcagagtgctctgaaaacatttgctgtggatgagacctcggtgtctggg
tacatctatcacaaactgttaggtcatgaggtagaagatgtaattattaaatgccagttg
ccaaagcgctttacagcacaaggacttccagatctcaaccattctcaggtttatgctgtg
aagactgtcctgcagcgtcctctgagccttattcagggtcccccgggtactggaaaaaca
gtgacatcagccaccatcgtctatcatctggctagacagggcaacgggcctgtgttggtc
tgtgctcccagtaacatagcagtggatcagctgactgagaagatccaccaaaccggactg
aaagtggttcgtctgtgtgctaaaagtcgtgaggcgattgactctcccgtgtccttcttg
gctttgcataaccaaatcagaaacatggatagcatgccagagcttcagaaattgcagcag
cttaaagacgaaactggagaactgtcatccgctgatgaaaagcgttaccgtgcactgaaa
cgaacagcggagcgggagttacttatgaatgcagatgtgatctgttgtacgtgtgtggga
gctggcgatccgagacttgcaaaaatgcagttccgctccatcctgattgatgaaagcaca
caggccaccgagccggagtgcatggtgcccgttgtcctgggggcaaagcagctgattctt
gtcggtgaccactgccagctgggccccgtcgtgatgtgtaaaaaagccgccaaggccggg
ctgtctcagtcgctcttcgagaggctggtggtgctggggatccggcccatccgcctgcag
gtgcagtaccgcatgcaccctgcgctcagcgccttcccctccaacatcttctacgagggg
tcgctccagaacggtgtcactgccgcggaccgtgtgaagaaaggttttgatttccagtgg
ccacagccagataagccgatgtttttctatgtcacacaaggacaagaagaaattgccagc
tcaggcacctcttacctgaacaggacggaagctgccaacgtggagaagataactacaaag
ctcctgaaggctggggccaagccagatcagatcggcatcattactccttacgaaggccaa
cgatcctatctggtgcagtacatgcagttcagtggttccttgcacacgaagctctaccag
gaagtggaaattgcgagtgtggacgccttccagggccgagagaaggacttcattatcctt
tcttgtgtgagggccaacgaacaccaaggaatagggtttctgaatgaccccaggcgtctt
aatgtagctctcacaagagcaaggtacggtgtaattattgttgggaacccgaaagcgctg
tctannnnnnnnnnnnnnngcaaggaacagaaggttctggtggaggggccactgaacaac
ctccgggaaagcctcatgcagttcagcaagccccgcaagcttgtcaacaccatcaacccc
ggtgcccggttcatgactactgccatgtatgatgcacgggaggcgattattccagggtcc
gtctatgaccggagcagccaagggcgcccgtccaacatgtactttcaaacgcacgaccag
atcgggatgatcagcgccggccccagccacgtcaccgccatgaacatccccatccccttc
aacctcgtcatgccgcccatgccgccaccagggtacttcggccaggctaacggaccagcc
gcaggacgcggggcgccaaaaggaaagactggccgtggtgggcgccagaaaaatcgtttt
gggattcctggaacgagtcagtcgaacctcccgaacagccaagcgagccaggacgtggtg
tcccagcccttctcgcagggccccctgacccagggctacatctccatgagtcagccctcg
cagatgagccagcccgggctctcccaaccagaattatcacaggacagttaccttggtgat
gagtttaagtctcagattgacgtggcgctgtcacaggactctacttaccagggtgaacgt
gcgtatcaacacggcggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
