Cellulophaga lytica DSM 7489: Celly_1739
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Entry
Celly_1739 CDS
T01434
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cly
Cellulophaga lytica DSM 7489
Pathway
cly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Celly_1739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cly03400
]
Celly_1739
Enzymes [BR:
cly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Celly_1739
DNA repair and recombination proteins [BR:
cly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Celly_1739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
ADY29563
UniProt:
F0RBE1
LinkDB
All DBs
Position
complement(1941142..1944483)
Genome browser
AA seq
1113 aa
AA seq
DB search
MGKSLILKSLAQLPQMQKLQTTIAKNEKNTTLTGLTGSALSFVISETFKEADTPFLVVFS
DKEEAAYHLNDLEQLVGEKDVLFYPGSYRRPYQIDEVDNANVLLRAEVLNRINSRKKPAL
LVTYPDALFEKVVTRKELDKNTLKIKVDDTITLDFLNEVLFEYKFKRVDFVTEPGEFSVR
GGIVDVFSFSNDVPYRIEFFGDEVDSIRTFDVETQLSTDKVTKITIVPNVENKFLDETRE
SFLKYIAAKTVIFSKNTELLHDRLDSLFAKAEEAFTKLTGELKHAQPKELFVDSNQLKKE
FDGFNVISIHQTATNADKSIVFHSKPQPSFNKKFDLLIENLDQNHANKYTNYIFCATEQQ
AKRFHDIFDEVEQDVHYKTVVLPLFQGFILDDIKVACYTDHQVFERYHKFNLKNGYAKKQ
AITLKELTKLDIGDYVTHIDHGVGKFGGLQKIDVEGKKQEAIKLMYSERDVLYVSIHSLH
KISKFAGKDGKPPKIFKLGSGAWKKLKQKTKTRVKQIAFDLIKVYANRRLKKGFKYAPDS
YLQHELEASFIYEDTPDQSKATEDLKKDMESDRPMDRLICGDVGFGKTEVAIRAAFKAVD
NGKQVAVLVPTTILAFQHHKTFAERLKDMPVTVDYVNRFRTAKEKRETLERLAEGKVDII
IGTHQLVNKNVVFKDLGLLIVDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTLQFSL
MAARDLSTINTAPPNRYPIDSHVVRFTEDTIRDAVSYEIQRGGQVFFIHNRIENIKEVAG
MLQRLVPDAKIGIGHGQMDGKKLETLMLAFMNGEFDVLVSTTIIESGLDVPNANTIFINN
ANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYDSMSNDARKRIQALEQFTELGSGFNIAM
KDLEIRGAGDILGGEQSGFINEIGFDAYQKILAETVEELKENEFKDLYEEVEGKDKVFVK
ETQIDSDFELLFPDDYVNNVTERLNLYTQLNQITTEEGLAKYEKELVDRFGEIPSPVEDL
LNSVRIKWIANSLGLEKIVLKKGKMIGYFIADQQSGFYQSPKFTKVLQFVQANTAICKMK
EKQTRAGLRLLLVFDKITTVEKALKSLAPFNTH
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
ttgggaaaatctctcattttaaaatcgttggcacagcttccgcaaatgcagaaactgcaa
actactattgccaaaaatgaaaaaaacacaacacttacaggtttaacaggctctgcccta
tcctttgtaatatctgaaacttttaaagaagcagacaccccttttctggttgtttttagc
gacaaagaagaggctgcttaccatttaaatgatttagagcaattggtaggcgaaaaagat
gtactgttttatcctggtagctaccgtagaccttaccaaatagacgaggtagataatgct
aatgtgctgctacgtgcagaggttttaaaccgaattaattcgcgtaaaaaaccagcatta
ctagttacgtatccagatgcgttgtttgagaaagtggtaacccgcaaagaactagataaa
aacacactaaaaattaaggttgatgacaccattaccctagactttttaaatgaggtgttg
tttgagtataagtttaaacgtgtagactttgttaccgaacctggagaattttcggttcgt
ggtggtattgtagatgttttttcgttttctaatgatgtaccttacagaatagaatttttt
ggtgatgaggtagatagcattagaacttttgatgtagaaacacaattatctacagacaaa
gtcactaaaattaccattgtacccaatgtagaaaacaaatttttagacgaaacaagagaa
agctttttaaaatatattgccgcaaaaactgtcattttttctaaaaatacagaactttta
catgataggttagactcgctttttgcaaaagcagaagaagcttttacaaaacttacaggc
gagctaaaacacgctcagcctaaggagttgtttgtagactctaatcagttaaaaaaagag
tttgatgggtttaatgttataagcattcatcaaacagcaacaaatgcagataaatctatt
gtttttcattctaaaccacagccttcttttaataaaaagttcgacttactaattgaaaac
ctagatcaaaatcacgctaataagtataccaattatattttttgtgctactgagcaacaa
gcaaaacgttttcatgatatttttgatgaagtagaacaagatgtacattacaaaacagtt
gtattacctctttttcaaggttttattttagacgatataaaagttgcatgctacacagat
catcaagtttttgagcgttaccataaattcaaccttaaaaatggctatgcaaaaaagcaa
gccattacacttaaagaacttaccaagttagatattggagattatgtaacacacatagat
catggcgttggtaaatttggcggtttacaaaaaatagatgtagaaggtaaaaaacaagag
gccataaaattaatgtatagtgagcgtgatgtgttgtacgttagcatacactccctacac
aaaatatctaaatttgcgggcaaagacggtaagcctccaaaaatatttaaactaggttct
ggtgcttggaaaaaactgaagcagaaaaccaaaaccagagttaaacaaattgcgtttgac
cttattaaagtatacgccaaccgtaggcttaaaaaaggatttaaatacgctccagatagt
tatttacagcacgagttagaggcttcttttatttatgaagataccccagaccaaagtaaa
gccaccgaagatcttaagaaagatatggagagtgataggccaatggatcgtcttatttgt
ggcgatgttggttttggtaaaacagaggttgctatacgtgccgcctttaaagcggtagat
aacggcaaacaagtagctgttttagtgccaactactatattggcttttcagcaccataaa
acatttgcagagcgtttaaaagatatgcctgtaacggtagattatgtaaaccgttttaga
actgcaaaagaaaaaagagaaaccttagaacgtttggcagaaggcaaagtagatattata
attggcacacaccaattggtaaataaaaacgtagtttttaaagatctaggtttgctaatt
gtagatgaggaacaaaaatttggtgttgctgtaaaagacaagttaaagtctattaaagaa
aatgtagatgtacttacattaactgctacgccaataccaagaacgctgcaatttagttta
atggcagccagagatttatctacaataaacacagcgccaccaaatagatacccaatagac
agccacgttgtgcgctttacagaagacaccattagagatgcagtttcttacgagatacaa
agaggcggacaagtgttttttatacacaaccgtatagaaaatattaaagaggttgctggt
atgttgcaacgtttggttcctgatgctaaaattggtattggtcacggacaaatggacggt
aaaaagctagagactttaatgcttgcttttatgaatggcgagtttgatgttttagtgtct
accaccattatagaaagtggtttagatgttcctaacgccaatactatttttataaacaac
gccaataattttggtttaagtgatttgcaccaaatgcgtggccgtgtagggcgtagcaat
aaaaaagcattctgttattttattacaccaccttatgactctatgagtaacgatgctcgc
aagcgtatacaagcattagaacaatttacagagttgggtagtggttttaatattgcaatg
aaagatttagaaatacgtggtgcaggtgatattttaggtggtgagcaaagcggatttatt
aatgaaattggttttgatgcctatcaaaaaatattagcagaaactgtagaagaattaaaa
gaaaacgagtttaaagatttatacgaagaggtagaaggtaaagacaaagtgtttgtaaaa
gaaactcagatagactctgattttgaacttttatttcctgatgattatgtaaataatgtt
acagaacgattaaacttatacacccaattaaaccaaattaccacagaagaaggtttagct
aagtatgaaaaagaattggtagaccgttttggggaaatacctagtccggttgaagattta
ctaaactcggttcgtataaaatggattgcaaatagcctaggtttagaaaaaattgtactt
aaaaaaggtaaaatgattggctattttattgcagaccaacaatctggtttttaccaaagc
cctaaattcactaaagttttacaatttgtacaagccaataccgctatttgtaaaatgaaa
gaaaaacaaactagagctggcttacgtttacttttagtttttgataaaattactactgta
gaaaaagcattaaagagcttggctccttttaatacgcattaa
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