Chlamydotis macqueenii (Macqueen's bustard): 104473217
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Entry
104473217 CDS
T08437
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cmac
Chlamydotis macqueenii (Macqueen's bustard)
Pathway
cmac03013
Nucleocytoplasmic transport
cmac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmac00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104473217 (UPF1)
03015 mRNA surveillance pathway
104473217 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmac03019
]
104473217 (UPF1)
Enzymes [BR:
cmac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104473217 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104473217 (UPF1)
Messenger RNA biogenesis [BR:
cmac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104473217 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104473217 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
ATPase
SLFN-g3_helicase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
AAA_22
AAA_25
Motif
Other DBs
NCBI-GeneID:
104473217
NCBI-ProteinID:
XP_010113936
LinkDB
All DBs
Position
Unknown
AA seq
790 aa
AA seq
DB search
VNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVY
CNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQ
ITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADY
DKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKG
IGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRA
NT seq
2372 nt
NT seq
+upstream
nt +downstream
nt
gttaatggacctgatggcattctgcagaatggagctgtggatgataacgtggctaaaacc
agccagcttctggcagagctgaattttgaagaagatgaagaagatacctattacacaaag
gatcttcctgtgcatgcttgcagttactgtggtatccatgaccctgcttgtgtggtttac
tgtaacaccagcaaaaagtggttctgtaacggacgtggaaatacatctggcagccacatt
gttaatcatcttgtgagagcgaagtgcaaagaggtgactctccacaaggatggacctcta
ggagagactgtcttggaatgttataactgtggatgccgtaatgtgtttctccttggcttt
attccagctaaggcagactccgtagtggttctgctgtgcaggcagccatgtgccagtcag
agcagtttaaaggatattaattgggacagttcgcagtggcagcctcttatccaagatcgc
tgtttcctttcatggctggtaaagattccatctgagcaggagcagttgagagcacgtcag
attacagctcagcagatcaacaaactggaagaactgtggaaagaaaatccatctgcaacc
cttgaggacttagaaaagcccggtgttgatgaagaaccacagcacgtcctgcttagatat
gaagatgcttatcaataccaaaatatatttggtcctctggtcaagcttgaggcagactat
gacaagaagctcaaggagtctcagacccaggataacatcacagtcagatgggacctgggc
ttgaacaagaaaagaattgcttatttcactttgccaaagactgattcagatatgcgtctt
atgcaaggagatgagatctgcttgaggtataaaggagacctggcccctttgtggaaagga
attggtcatgttatcaaagttcctgataattatggtgacgagatagccattgagctgagg
agcagcgtgggagcgcctgtggaagttactcataacttccaagtggattttgtgtggaag
tctacttcatttgacagaatgcagagtgctttaaaaacatttgctgtggatgagacttca
gtgtctgggtacatctatcacaagctgttaggtcatgaggtagaagatgtcattattaaa
tgccagttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtt
tatgctgtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggtacc
ggaaaaacggtgacatcggccacaatcgtctatcatctggccagacagggcaatgggcct
gtgttagtctgtgctccaagtaatatagctgtggatcagttgactgagaagatccatcag
actggactgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcctgta
tccttcttggcattgcacaaccagatcagaaacatggatagcatgccagagcttcagaaa
ctgcagcaacttaaagatgaaactggagaactgtcatctgctgatgagaaacgttaccgt
gcgctgaaacgaacagctgagcgtgaattacttatgaatgcagatgtgatctgttgcacg
tgtgtgggagctggtgatccgagacttgcaaaaatgcagttccgctctattctgattgat
gaaagcacacaggctactgagccagagtgcatggtgccggttgtcctgggagcaaaacag
cttattcttgtgggtgaccactgccagctgggtcctgttgtgatgtgtaaaaaagctgcc
aaggctggcctgtctcagtccctctttgagaggctcgtggtgctggggattcggccgatt
cgcctgcaggtgcagtaccgcatgcatcctgcgctcagtgcttttccatccaacatcttc
tatgagggctcactccagaatggtgtcaccgcagcggaccgtgtgaaaaaaggttttgat
ttccagtggccgcagccagataagccaatgtttttctatgttacgcaaggacaggaagaa
attgccagctcaggcacttcttacttgaacaggacggaagctgccaatgtggagaagata
actacaaagctgttgaaagccggtgccaaaccagatcagattggcattattaccccttac
gaaggtcagcgatcctatctggtgcagtacatgcagttcagtggctccttgcatacaaag
ctctaccaggaagtggaaattgcgagtgtggatgccttccaggggcgagagaaggacttt
attatcctttcttgtgtgagagcaaatgaacaccaaggaatagggtttctgaatgacccc
aggcgtctcaatgtagctcttacaagagcaag
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integrated database retrieval system
