Pacificitalea manganoxidans: CBW24_07195
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Entry
CBW24_07195 CDS
T05128
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cmag
Pacificitalea manganoxidans
Pathway
cmag03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cmag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CBW24_07195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmag03400
]
CBW24_07195
Enzymes [BR:
cmag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CBW24_07195
DNA repair and recombination proteins [BR:
cmag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CBW24_07195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ATI41803
UniProt:
A0A291LYI5
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All DBs
Position
1593232..1595688
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AA seq
818 aa
AA seq
DB search
MGRLDRYLERRDFSATPEPSDAGAAPALALRYSIQKHAATRTHFDLRLEWDGALLSWAVT
RGPSFHLGEKRLAVRTEDHPISYLEFEGNIPARHYGAGAVMLWDLGHWEPLTPVDKGLRK
GHLEFRLHGVRLSGAWHLIRMNTKEKRENWLLTKQEDEVAGRRDPVTQYRRGVTSRRSLA
EIRKDAPPVDLREGKRPRFAKPQLATLSDTLPEGDAWWHELKFDGYRGMVALGQGGPKAY
TRNGKDWSDRFASLLPAFDDLPCDSALIDGEIVAGAGIQGFSALQDALKTGGPFRFYAFD
LLERDGKDLTGAPLTDRRAELEDLWRGMSPLGRVQLSPIIERRPEQVFGDICSAGGEGLI
SKRIDAPYRHSRTKDWLKVKCELRDEFVILGWQPSDKRGRPFASLLLGANAGGEMRYVGK
VGTGFSEDDMDRLIRAMRPLSRKTPPAEADPADTRDAQWITPRLVAEVQYAERTANGLLR
HARYLGLREDKPAKDVEIDNDRSTEAVMDTDAGQSADKLTVAGLRISSGDRVVYPDAGIT
KAQVAEYYAALADRILPFAADRPLSLLRLPEGLKGETFFQKHAGKGFPDALREMALEESD
GGTASYMYVTDAAGLVGAAQMGALELHIWGSRRDRLDRPDRMVFDLDPDPGLGFADVTAA
ASDLRDRLEALGLPSWPLLSGGKGVHVVVPLRRVAGWDTVKLYARIFATLLASEEPDRFV
ATMSKAKRKGRIFIDWLRNERGATAIAPYSLRARAGAPVAVPVRWDDLRGYDSAQVFDLP
RVQAGDIPDPELPDPGSLTEPRISALEAALATAQEADD
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggggcggctcgaccgatatctggagcggcgcgatttcagcgcgacgccggagccatcg
gatgcgggggccgcgcctgcgcttgccctgcgctacagtatacaaaaacacgccgcgacc
cgcacgcatttcgacctgcgtctggaatgggacggggcactgctaagctgggcggtcacc
cgtggtccctcgtttcatctgggggagaagcgactggccgtgcggaccgaagatcacccg
atctcctatcttgaattcgaaggcaatattcccgcgcgccattatggggcgggtgcggtg
atgttgtgggatctgggccattgggagccgctgaccccggtggataaggggctgcgcaag
ggccatttggagtttcgtctccacggtgtgcgtctgtcgggtgcgtggcatttgatccgt
atgaacacgaaggagaaacgcgaaaactggctgctgacgaagcaggaggatgaggtcgca
ggccgccgcgatccggtgacccagtatcggcggggcgtcaccagccgccgcagtctggcg
gagatacgcaaggacgcgccgcccgttgatctgcgcgagggcaagcgcccgcgctttgcc
aagccgcaattggcgaccctgagcgatacgctgcccgagggggatgcgtggtggcatgaa
ctgaaattcgacggctatcgcggcatggtggccttggggcagggcggtccaaaggcgtat
acccgcaatggcaaggattggtcggaccgtttcgccagcctgctgcccgcctttgacgat
ctgccatgtgacagtgcgttgatcgacggggaaatcgtggcgggcgctgggattcagggg
ttttccgccttgcaggatgcgctgaagacaggcggtccgttccggttctatgccttcgat
ctgctggagcgtgacggcaaggatctgaccggcgcacctttgacagaccgccgtgccgaa
ttggaggatctgtggcgcggcatgtctccactgggccgcgtgcagctatcccccatcatc
gaacgccgccccgaacaggtcttcggcgatatttgctcggccgggggggaggggctgatc
tccaaacggatcgacgcgccctatcgccatagccgcaccaaggactggctgaaggtgaaa
tgcgagttgcgggacgagttcgtcattctgggctggcaacccagcgacaaacgcgggcgt
ccgtttgcctcgctgctgttgggggccaatgccgggggggaaatgcgctatgtcggtaag
gtcggcacaggcttctccgaggatgacatggacaggctgatccgcgccatgcggcccctc
agccgaaaaaccccaccggcggaggccgacccggccgatacccgcgatgcgcaatggatc
acgccacggctggtggcggaggtgcaatatgccgagcgcacggccaacgggctgttgcgg
cacgcccgctatctgggcctgcgcgaagacaaacccgccaaggatgtggagatcgacaat
gaccgcagcacggaggccgtaatggatacggatgcagggcaatccgcagacaagctgacc
gtcgctggcctgcgtatcagcagcggcgaccgtgtggtctacccggatgccggcatcacc
aaggcgcaggtcgcggaatattacgcggctttggcggaccgcatcctgccctttgccgcc
gatcgcccgctatccctgctgcgtctgcccgaagggctaaagggagagacgttttttcaa
aagcacgcgggcaagggcttccctgacgcgttgcgcgaaatggcgttggaggaatccgat
ggggggaccgccagttacatgtatgtcaccgatgctgcggggttggtgggcgctgcgcaa
atgggggcgctggaattgcacatatggggcagtcgccgcgacaggctcgaccgaccggat
cgcatggtgttcgacctcgaccccgatccggggcttggctttgccgatgtgaccgcggcg
gcctccgatctgcgcgaccggttggaggcgctgggcctgccaagctggcctttgctgtcg
ggcggcaagggggtgcatgtggtcgtgccgctgcgccgtgtcgcgggctgggacacggtc
aagctatacgcgcgcatattcgccacgctgctggcctccgaagagcccgaccgtttcgtc
gccaccatgtcaaaggccaagcgcaagggccgcatctttatcgactggctgcgcaatgaa
cgcggcgccacggcgattgcgccgtattccttgcgcgcgcgggctggagcgcccgttgcg
gtgccggtccgctgggacgacttgcgtggctatgacagcgcacaggtgttcgacctgccc
cgcgtgcaggcaggcgacatccccgatccggaattgcccgatccggggagcctgaccgag
ccgcgcatctccgcgctcgaagcggcgcttgccaccgcgcaggaggcggacgactaa
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