Pacificitalea manganoxidans: CBW24_12925
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Entry
CBW24_12925 CDS
T05128
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cmag
Pacificitalea manganoxidans
Pathway
cmag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBW24_12925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmag03019
]
CBW24_12925
Enzymes [BR:
cmag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CBW24_12925
Messenger RNA biogenesis [BR:
cmag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBW24_12925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATI42815
UniProt:
A0A291M268
LinkDB
All DBs
Position
complement(2845472..2846764)
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AA seq
430 aa
AA seq
DB search
MDFDMLGLAPRLLAKLPELGISDPTPIQTQAIPHALNGRDVMGLAQTGTGKTLAFGLPLL
DALMKNGSKPAPRTVRGLVLAPTRELAKQIADNLKPFTHGTHLKVGIVVGGAGIHGQIQR
LERGTDLLVATPGRLIDLIDRRAVDLSQAQFLVLDEADQMLDLGFIHALRKIAPLLAKKR
QTMLFSATMPKQMAELSSAYLNDPVRVEVSPPGKAADKVTQEVHFIEQSNKTGKLIDLLK
SHRSELALVFARTKHGSDRLMRQIERAGVDAVAIHGNKSQGQRERAIRDFRDGRIKVLVA
TDVAARGIDIPGVAFVYNYDLPNVPENYVHRIGRTARAGKEGQAVALCAPEEMGDFRAIE
KVMKLSVPVASGQPWEVSGTSPAGRTRRRGGGNGGGGHKGGAPRVGKPANSGAPSGKPQR
RRRRAGGGGR
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgacatgctgggccttgcgccccggcttctcgccaagctgcccgaactgggc
atctctgacccgacccctattcagacgcaggcgattccgcatgcgcttaatggccgtgac
gtgatgggccttgcccagaccggcaccggcaaaacgctggcctttggtctgccgctgctc
gacgcgctgatgaagaacggctcgaaaccggcgccgcgcaccgtgcgtggtctagtgctg
gcgccgacacgcgaactggccaaacagatcgccgacaacctgaagccgttcacccatggc
acgcatctgaaagtcggcatcgtcgtaggcggcgcaggcattcacggccagattcagcgg
ctggagcggggcaccgacctgctcgtcgcgacgccgggtcgtttgatcgacctgattgac
cgccgcgcggtggatctgtcgcaggcgcagttccttgtgctggacgaagccgatcagatg
ctcgatctgggctttatccatgcgctgcgcaaaatcgcgccgctgctggccaagaagcgt
cagaccatgctgttctcggccacgatgcccaaacagatggccgagctgtcgtctgcttat
ctcaacgatccggttcgggtcgaagtgtcgcctccgggcaaggccgccgataaggtgacc
caagaggtccacttcatcgagcagagcaacaagaccgggaagctgatcgacctgctgaaa
tctcaccgcagtgagctggcgctggtatttgcccgcacgaagcatggctccgatcggctg
atgcgccagatcgagcgtgcaggcgttgatgcggtcgcgatccacggcaacaaaagccag
ggccagcgggagcgggcaatccgcgatttccgcgatggccggatcaaggtgctagtggcg
accgacgtggccgcacgcggcatcgacattccgggtgttgcgttcgtctataactacgat
ctgccgaacgtgccggaaaactatgtgcaccgcatcggccggaccgctcgggcgggcaag
gaagggcaggcggtcgcgctgtgtgcccccgaggaaatgggtgatttccgcgccatcgag
aaggtgatgaaactctccgttccggtggcatccggtcagccgtgggaagtgtccggcacg
tcgcccgcaggccgcacccggcgtcgcggtggcggcaatggagggggcggtcacaagggc
ggcgccccgcgcgtgggcaaacccgccaatagcggcgcgccttccggtaagccgcagcgt
cggcggcgtcgtgccggtggcggcggtcgctga
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