Cobetia marina: BFX80_12875
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Entry
BFX80_12875 CDS
T04789
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cmai
Cobetia marina
Pathway
cmai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BFX80_12875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmai03400
]
BFX80_12875
Enzymes [BR:
cmai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BFX80_12875
DNA repair and recombination proteins [BR:
cmai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BFX80_12875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_22
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AOM02020
LinkDB
All DBs
Position
3137616..3141143
Genome browser
AA seq
1175 aa
AA seq
DB search
MFETPLTPPLPRSPRETTYWTLQDGSAAALALARLADADEAPLMVITPDTASAQRLEADL
HFYTRHPERLLPFPDWETLPYDSFSPHQDIVSERLRTLRTLQASRRAIVPVPVNTLMQRL
APADYIAGQVFSLARGDTLDRENFRSRLSRAGYRAVETVYEPGEYALRGALIDLFPMGSE
QPLRIDLFDDEIDTLRAFDPDTQRSGDKVEAIEILPAHEYPLTRSAIACFREGFETLFDV
DPRQCILYNDAIKGIPSPGLEQYLPLFFEETATLFDHMGDNLRIAMLPGAREAAEHHWDA
ITTRYANLGVDPTRPLLPPHRAFVPVNELFALIKQHERIELLREPNAHTIEFGQQALPSL
AIDARSADPTQALASFLKQRLNGQSAQRILFVAETQGRREVVEEQLAALLRSFGLRSLED
FASFQHFVDSPAAVGLTVGGLTRGAWVAGEQTSQAPSPEREDAAKGLVIVTETELYGEVV
RQSRRQARATDDNELAVRHLSELREGAPVVHHTHGVGRYLGLETIDAGGQEAEFLALEYA
DGAKLYVPVDSLHLISRYSGASDELAPLHKLGSEQWEKAKRKAAEKIRDTAAELLDVYAR
REARVGHACDFPAEDYARFAASFPFEETPDQAQTIGAVIQDMCSPQPMDRVVCGDVGFGK
TEVAMRAAFLAVNSGRQVVVLVPTTLLAQQHYDNFRDRFADTAVEIALLSRFTSGKGQET
SLERIRKGQADIVIGTHKLLSKSLELPNMGLLVIDEEHRFGVSQKERLKSLRAEVDILTL
TATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQRNDGVIKEAILRELLRGGQAYV
LHNEVKTIEESAARIAELVPEAIVGVAHGQLPERSLERRMSDFYHKRFNVLVCSTIIETG
IDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTRDAVKRLEAIS
ESHDLGAGFTLASHDMEIRGAGELLGDEQSGQMETIGYSLYMEMLDRAVKAIKAGKTPNI
ESPLDEGVEVGLNLPALIPGDYLHDVQQRLMMYKRISNAENASDLRELQVEMIDRFGLLP
EPVKTLFRQTRLRQRAQALGIVKLEAGAARGRIIFGAQTPVDPLTLVTLIQRQPDVYKLE
GADTLRFTTEMEDAEARFSFCESLLELLNAKTQAA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgttcgagactccgctgacgcccccgttgccacgctctccccgtgagaccacctactgg
acgctgcaggatggcagcgctgccgccctggcgctggcgcgcctggcggacgccgatgaa
gcgccactgatggtgatcacgccggacaccgccagcgcccagcgtctggaggcggacctg
cacttctatacccgccacccggagcgcctgctgccattccctgactgggagacactgccc
tacgacagtttctcgccccaccaggacatcgtctcggagcgcctgcgcacgctgcgcacg
ctgcaggccagccgccgcgccatcgtgccggtgccggtcaacaccctgatgcagcgcctg
gcgccggcggattacatcgccggccaggtcttcagtctcgccaggggagacactctcgac
cgcgagaatttccgctcacgcctctcacgtgccggataccgtgcggtggagaccgtctac
gagcccggagagtatgcgttgcgcggcgcgctgatcgacctgttcccgatgggcagtgag
caaccgctgcgaatcgatctgttcgatgacgagatcgacaccctgcgcgccttcgacccc
gacacccagcgcagcggcgacaaggtcgaggcgatcgagatcctgcccgcccacgaatat
cctctgacgcgcagcgccatcgcctgtttccgcgagggcttcgagacactgttcgatgtc
gacccccgccagtgcatcctctacaacgatgccatcaagggcattccctcaccggggctc
gagcagtatctgccgctgttcttcgaggagaccgcgacgctgttcgatcacatgggcgac
aacctgcggatcgccatgctgccgggagctcgcgaagcggccgaacatcattgggacgcc
atcaccacgcgctacgccaatctcggcgtggaccccacgcgcccgctgctgccgccgcat
cgcgccttcgtgccggtcaacgaactgttcgcgttgatcaagcagcacgagcgcatcgaa
ctgctgcgcgagcccaatgcgcacaccatagaattcggccagcaggcgctgcccagcctc
gccatcgatgcacgcagcgccgaccccacccaggcgctagcgagcttcctcaagcagcga
ctcaacggccagagcgcacagcgcatcctgttcgtcgccgagacccagggtcgccgggaa
gtcgtcgaggagcagctcgctgcgctgctgcgcagcttcgggctacgcagcctggaggac
ttcgcgagcttccagcacttcgtcgacagtcccgccgcggtcggcctgaccgtcggcggc
ctgacgcgtggtgcctgggtagcgggtgagcagacctcccaggcgccctcccccgagcgc
gaagacgccgccaaggggctggtcatcgtcaccgagaccgagctctatggcgaggtagtc
cgccagagccgtcgtcaggcgcgtgccaccgatgacaacgaactggccgtgcgtcatctc
tcggagctgcgcgaaggcgcaccggtggtacaccacacccacggggtcggtcgctacctg
ggactcgagaccatcgacgccggcggtcaggaagccgagttcctcgcccttgaatacgcc
gacggcgccaagctctatgtgccggtggacagcctgcatctgatctcacgctattccggc
gccagcgatgagctggcaccgctgcacaagctggggtccgagcagtgggagaaggccaag
cgcaaggcggccgagaagattcgcgacaccgccgccgagctgctggatgtctatgcacgg
cgcgaagcgcgtgtcggccatgcctgcgacttccccgccgaggactacgcccgtttcgcg
gccagcttccccttcgaggagacaccggaccaggcgcagaccatcggcgcggtgatccag
gacatgtgctctcctcagccgatggatcgcgtggtgtgcggcgatgtcggcttcggcaag
accgaggtcgcgatgcgcgccgccttcctggccgtcaactccggacgccaggtggtggtg
ctggtacccaccaccctgctggcccagcagcattacgacaacttccgcgatcgcttcgcc
gacaccgcggtggagatcgccctgctgtcgcgcttcaccagcggcaagggccaggaaacg
tcactggagcgcatccgcaaggggcaggcggatatcgtgatcggcacccacaagctgctc
tccaagtcgctggaattgcccaacatgggactgctggtcatcgatgaggagcaccgcttc
ggggtctcccagaaggagcgactcaagagcctgcgtgccgaagtggacatcctgaccctg
accgccacgccgattccgcgcacgctcaacatggcgatgagcggcattcgcgacctgtcc
atcatcgccacgccaccggcgcgccgcctgtcggtgaagaccttcgtccagcagcgtaac
gacggcgtgatcaaggaagccatcctgcgtgagctgctgcgcggcggacaggcctacgtg
ctgcacaacgaggtcaagaccatcgaggaaagcgcggcacgcatcgcggaactggtgccg
gaggccatcgtcggtgtcgcccacgggcagctgccggagcgtagcctggagcggcgcatg
tcggacttctaccacaagcgcttcaacgtgctggtctgctcgaccatcatcgagaccggc
atcgacgtcccgagcgccaacaccatcatcatcgaacgcgccgacaagttcggcctcgcg
cagctgcaccagctgcgtgggcgcgtcgggcgctcgcatcaccaggcctacgcctacctg
ctgaccccgcaccccaaggccatgacccgcgatgcggtcaagcgtctggaggcaatcagc
gaatcgcatgacctgggggcaggcttcaccctggcctcccatgacatggagatccgtggc
gcaggcgagctgttgggtgatgagcagtccggccagatggaaaccatcggctactcgctg
tacatggagatgctggatcgcgccgtgaaggccatcaaggccggcaagacgcccaacatc
gaatcgccgctggatgagggcgtggaagtcggactcaatctgccggcgctgattccgggt
gactacctccacgatgtccagcagcgcctgatgatgtacaagcgcatcagcaacgccgag
aacgccagcgatctccgggaattgcaggtcgagatgatcgaccgcttcggcctgttgccg
gagccggtcaagacgctgttccgccagacccggctgcgccagcgcgcccaggcactgggc
atcgtcaagctggaagccggtgccgcacgcggtcgcatcatcttcggcgcccagacgcct
gtcgatcccttgacgctggtgacactcatccagcgccagcccgatgtctacaagctggaa
ggtgccgacacactgcgcttcaccaccgagatggaagacgccgaggcgcgcttcagcttc
tgcgaatccctgcttgagctgctcaacgccaagacccaggcggcctga
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