Croceicoccus marinus: A9D14_07075
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Entry
A9D14_07075 CDS
T04890
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cman
Croceicoccus marinus
Pathway
cman03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cman00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A9D14_07075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cman03400
]
A9D14_07075
Enzymes [BR:
cman01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A9D14_07075
DNA repair and recombination proteins [BR:
cman03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A9D14_07075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ARU15994
UniProt:
A0A1Z1FB66
LinkDB
All DBs
Position
complement(1466813..1469341)
Genome browser
AA seq
842 aa
AA seq
DB search
MTTRTDPLAEYNAKRDFAKTPEPRGEAVKAKGEAKFVVQKHDATRLHWDLRLEMDGVYKS
WAVTKGPSPDTDIKRLAVRTEDHPISYGTFEGTIPKDEYGGGTVMLWDRGTWAPIEGKSA
RDIEKGHLHFILHGERMKGEWLLIRLKKKPGEKRENWLLRKLDDEFAEEGDALVERELTS
VLTGRSMAEIEADKKGEYLLEDKSGDAFAAQMKKASQRNAVKAKPARKRAAKSAAKLPEF
RKPQLAMLVDDVPAGNGWMHEIKFDGYRAMVAAKGDEVRVYTRSGKDWTDKFAPLVGVLA
ALDLPPCLIDGEIVATDGKGNPDFSTLQQVLKRGHGSQGADDALQFHAFDLLELNGEDLA
ALTNIERKERLEALLADAAPPIHVADHVIGAGEKLYDAMCKAGQEGVISKKIDAPYRHAR
SKGWLKIKCTRRQEFVVIGWKKSSAKGRPFASLLLAQNEGDELVYKGNVGTGFSGDDLDM
LTGRMKRLERKTPPAEVDKPSSRGVTWLTPRLVAEIAFAEFTADGNVRHGSFLGLRSDKD
ADEVTPEKPAKAPLVENEVEISSRDRVVFPDSGQTKGELADYYRAVAGIMLPFAARRPVS
LVRCPQGRAKKCFFQKHDSGGFGDAVRHVPIAEKDGGTEDYLYVEDARGILQCVQMGTIE
FHGWGSRTSDVEAPDRMIFDLDPDEGLDFDAVKTAAQDIRARLADIGLVSFAMLSGGKGV
HVVVPLTTGHDWAAHKDFARRFAEALSVAEPDRFVATMSKAKRKGRIFIDWLRNQRGSTA
VLPYSARARSGAPVAAPIGWNELKNIDNAHRWTIGDADELLKRASGKTLAGWGFADQALP
DI
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaaggactgaccccctcgccgaatataacgcgaagcgcgacttcgcgaagacg
cccgaaccgcgcggagaggcggtcaaggcgaagggcgaggcgaaattcgtcgtgcagaag
cacgacgcgacccgcctgcactgggacctgcggctggaaatggacggcgtctataaaagc
tgggccgtcaccaagggaccgtcgcccgacaccgacatcaagcggctggccgttcggaca
gaggatcacccgatctcctacggcaccttcgaagggacgatccccaaggatgaatatggc
ggcggcacggtcatgctttgggatagggggacctgggccccgatcgaaggcaagagcgcc
agggacatcgagaaggggcatctgcatttcatcctgcatggcgagcggatgaagggggaa
tggctgttgataaggctgaagaaaaagccgggagaaaagcgggaaaactggctgctgcgc
aagctggacgatgaattcgccgaagagggcgacgcgctggtcgagcgcgaattgaccagc
gtgctgaccgggcgatcgatggcggagatcgaggccgacaagaagggcgaatatttgctg
gaggacaagagcggcgatgcattcgccgcgcagatgaaaaaggcttctcagcgcaatgcg
gtcaaggcgaaaccggctcgcaaacgtgccgccaagtcggccgccaaactgccggaattt
cggaaacctcaactggcgatgctggtcgacgacgtgccagcgggaaatggctggatgcat
gagataaaattcgacggctaccgcgccatggtggctgcgaaaggcgacgaggtgcgtgtc
tatacccgcagcggcaaggactggaccgacaagttcgctccgctggtcggggtgctcgcc
gctctcgacctgccgccttgcctgatcgacggagagattgtcgcgaccgatggcaagggc
aatcccgatttctctacattgcagcaggtgctgaagcgcgggcacggatcgcagggcgcg
gacgatgcgctgcagttccacgccttcgacctgctggaattgaacggcgaagacctagcg
gcgttgaccaatatcgaacgcaaggaacggctggaggcgctgctggccgatgccgcgccg
ccgattcacgttgccgaccatgtcatcggtgcgggcgagaagctgtacgacgcgatgtgc
aaggcggggcaggaaggggtcatctcgaaaaagatcgacgccccctatcgccatgcacgc
agcaagggttggctgaagatcaaatgcacccggcggcaggaattcgtcgtgatcggctgg
aagaagagcagcgccaagggacgcccgttcgcatccttgctgctggcccagaacgagggc
gacgagctggtctacaagggcaatgtcggcaccggcttttcgggcgacgatctcgacatg
ctgacgggcaggatgaagcggctggaacgcaagaccccgcccgccgaagtcgacaaaccg
tcgagcaggggcgtcacctggctcacccccagactggtcgccgagatcgcgttcgccgaa
ttcactgcggacggcaatgtgcgccacggcagctttcttggcttgcgatccgacaaggac
gcggacgaggttaccccggaaaaacccgccaaggctccgctggtggaaaacgaggtcgag
atttcaagccgcgaccgcgtggtgtttcccgattccggccagaccaagggcgagctggcc
gattactaccgggcggttgccggcatcatgctgccctttgccgccaggcgcccggtcagc
cttgtgcgctgtccgcaggggcgggcgaagaaatgctttttccagaagcacgacagcggc
ggctttggcgatgcggtccgccatgtccccatcgccgaaaaggacggcgggaccgaggat
tacctctatgtcgaggatgcgcgcggcatcctgcaatgcgtgcagatgggcacgatcgag
ttccacggatggggcagccgtacctccgatgtcgaggcgcccgaccggatgatcttcgac
ctcgaccccgacgaggggctggacttcgatgcggtgaagaccgccgcgcaggatattcgc
gcgcggcttgccgacatcggccttgtcagctttgccatgctgtcgggcggcaagggcgtg
catgtcgtggtgccgctgaccaccggccacgactgggccgcgcacaaggacttcgcccgc
cgtttcgccgaggcgctgagcgtggccgagcccgaccgcttcgtcgcgaccatgagcaag
gccaagcgcaaggggcggatcttcatcgactggctgcgcaaccagcgcggcagcacggcg
gtgctgccctattcggcgcgtgcgcgcagcggtgcgcccgtggccgcgcccatcggctgg
aacgagctgaagaacatcgacaatgcacatcgctggacaatcggcgatgctgacgaactg
ctgaaacgcgcatcgggcaagacgctggccgggtgggggttcgccgaccaggccctgccc
gatatctag
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