Colossoma macropomum (tambaqui): 118796972
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Entry
118796972 CDS
T09004
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03013
Nucleocytoplasmic transport
cmao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118796972 (upf1)
03015 mRNA surveillance pathway
118796972 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118796972 (upf1)
Enzymes [BR:
cmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118796972 (upf1)
5.6.2.5 RNA 5'-3' helicase
118796972 (upf1)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118796972 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
118796972 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
YusW
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
118796972
NCBI-ProteinID:
XP_036412040
LinkDB
All DBs
Position
Unknown
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVSQNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRLKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQIGMIGAGPNPMASMN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGVGNHGSGQANMASS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagaggcgtacgggccgagctcgcagactctcaccttcctggacacggaggaa
gcagagctgcttggagccgatacccagggctcggagttcgagttcaccgacttcactctg
ccgagtcagactcagacgcaaggccaaacgcagagccagttggacaaccaggtgaacgga
ccagacggagtatcgcagaacggcgaagatgctgttgtgaaaaccagtcaacttctggct
gagctgaattttgaagaagatgaggaggacacctattacaccaaggatcttcctgtgcat
gcatgcagttattgtggcatccatgatcctgcttgtgtagtgtattgcaacaccagcaag
aaatggttctgcaatggtcgtggcaacacctctggcagccatattgtcaatcacttggtg
agggccaaatgtaaggaggtgaccctgcataaagatggcccattgggggagactgttttg
gaatgctacaactgtggctgtcgtaatgtcttcctcttgggcttcatcccagccaaggct
gattctgttgtggtgctcctgtgcaggcagccatgtgccagtcagagcagtctgaaggac
attaactgggacagctcacagtggcaacctctgatccaggatcgctgctttctgtcctgg
ctggtaaagatcccgtctgaacaggagcagctgagggcgcgtcagatcactgctcagcag
atcaacaaactggaggagctgtggaaggaaaatcctacagcgacacttgaggatttggaa
aagcctggtgtggacgaggagcctcagcatgtgctgcttcgctatgaggatgcctaccag
taccagaacatcttcggcccacttgtaaaactggaggcagactatgataagaagctcaaa
gagtcccagacccaagacaatataactgtcaggtgggacttgggactgaataaaaagagg
attgcttatttcacacttcccaagacggattcaggtgatatgcgtctgatgcaaggggat
gagatctgcctgcgttataagggagacatggctcctctctggaagggaattggacacgtc
atcaaggtccctgacaactatggtgatgagattgctattgaactgaggagtagtgctgga
gctcctgtggaggtgcctcacaacttccaggtggactttgtgtggaaatccacttccttt
gaccgcatgcagagtgccctgaaaacatttgcagtggatgaaacctcagtatctggctac
atctaccacaagctacttggccatgaggtggaggatgtgatcattaaatgccagctacca
aagcgcttcactgcccaaggcctgcctgacctcaaccactcacaggtatatgctgtgaag
actgtgctgcagcgtcctctcagtctgattcagggccctccaggtactggcaagacggtc
acctcagcaaccattgtttaccacctggccagacagggcaacgggccagtgctggtgtgt
gctcccagtaacattgctgtggaccagctgacagagaagattcaccagaccgggctgaag
gtagtgcgtctgtgtgctaagagtcgtgaggctattgattctcccgtgtccttcctcgcc
ctgcacaaccagatccgcaacatggacagtatgccagagctgcagaagctacagcagctg
aaggatgagactggagagctgtcctcctcagatgagaaacgctacagagcccttaaacgc
acagcagaaagagagctgcttatgaatgcagatgtgatctgctgtacttgtgtgggtgca
ggtgatcctcgcctggctaagatgcagttccgctccattctgatagacgagagcacccag
gccactgagccagagtgcatggtacctgtagtgctgggagccaagcagctgatcctggtg
ggtgaccactgtcagttgggcccagtggtgatgtgtaaaaaggcagctaaagcaggattg
tctcagtccctgtttgagaggttggtggtgctgggcatcagacccatccgtctccaggtg
cagtaccgtatgcaccctgcactcagcgcctttccctccaacatcttctatgaaggatcc
ctccaaaatggagtcactgccgctgaccgcctcaagaaaggctttgatttccagtggcct
cagccagataagcccatgttcttctatgtgacgcagggccaggaggaaatcgctagctca
ggcacctcctacctcaacaggaccgaggctgctaatgtggagaagatcaccactcgccta
ctgaaggctggagccaaacctgaccaaatcggtatcatcacgccgtacgagggacaacgt
tcctatctggtgcaatacatgcagtttagtggctctctgcacacaaagctgtaccaggag
gtggagatagctagcgtggatgccttccagggccgagagaaggacttcatcattctgtcc
tgtgtcagggccaacgagcaccagggcatcggcttcctcaatgacccgcgtaggctcaac
gtggccctcaccagggcgaggtatggtgtaatcattgtggggaatcctaaagctctgtcc
aagcagccgctgtggaaccacctgctgaactactacaaggagcaaaaggttctggtggag
ggacctctcaacaatctgagagagagtcttatgcagttcagcaaacctcggaagcttgtc
aacactattaaccctggagctcggttcatgagcactgcgatgtatgatgccagagaggcc
atgatacctggatcagtgtacgatcgcagcagcactggacgtccgtcaaatatgtacttc
cagactcacgaccagattggaatgattggggcagggccaaaccccatggcctcaatgaac
atccctattcccttcaacctggttatgccccccatgcccccgccaggctacctgggtcag
gttaacggccctgctgctggccgtggagctccgaagggtaagacgggtggacgtgggggt
cgtcaaaggaaccgtggcgtgggtaaccatggcagtgggcaggccaacatggccagcagc
caggccagccaggacctggtgtctcagcccttctcccagggccccctaacccaggggtat
atcactatgagccagccctcacagatgagccagccaggcctgtcccagcctgaactctct
caggacagttacctgggtgatgagttcaagtcgcagatggacgtggcattgtcccaggat
tccacataccagggtgaacgggcataccaacacggaggagtgaccggactctctcagtac
tag
DBGET
integrated database retrieval system
