Colossoma macropomum (tambaqui): 118803121
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Entry
118803121 CDS
T09004
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03030
DNA replication
cmao03410
Base excision repair
cmao03420
Nucleotide excision repair
cmao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118803121 (lig1)
03410 Base excision repair
118803121 (lig1)
03420 Nucleotide excision repair
118803121 (lig1)
03430 Mismatch repair
118803121 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmao03032
]
118803121 (lig1)
03400 DNA repair and recombination proteins [BR:
cmao03400
]
118803121 (lig1)
Enzymes [BR:
cmao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118803121 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
118803121 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
118803121 (lig1)
DNA replication proteins [BR:
cmao03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
118803121 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
118803121 (lig1)
DNA repair and recombination proteins [BR:
cmao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
118803121 (lig1)
NER (nucleotide excision repair)
Other NER factors
118803121 (lig1)
MMR (mismatch excision repair)
Other MMR factors
118803121 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
118803121
NCBI-ProteinID:
XP_036419525
LinkDB
All DBs
Position
Unknown
AA seq
997 aa
AA seq
DB search
MQRSIASFFQPVKCKEKNDGPVKGKSEPVKSPLKTQNGEKECDSPVKKTSKRSRPIIDSD
DEDLPTVKDVASTQDRDQAVKPDKEKTDVFKATPSPLSPKPVATPTTPVTPATPAVSGDS
GTPGTPVTPTSTSPSGIPKRKTARKQFPKRKLDNRSDGEREKEEEEKEGNEREEGQESKR
ARIERSADQAAGNEEEAMELEEKNVNEKTIEEEQKEKKDEKMDEGIGSGVKEETNKQSDE
NEVEQDEEKDGVKRKNGDVGKVKEEKCSPERLTKEGMNADEDKREGSAKKKPISSFFAPR
KAAVKLEKSEERNDGEKKKDEGKAATVHEEKEKKGEKGAEPANQSQYDPSKAHYHPINDA
CWKKAQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVILLSPDDLLCCVYLCLNQLG
PAYQGLELGVGETVLMKAVAQATGRQLEKIKAEAQEKGDLGLVAESSRSNQRMMFAPANL
TATGVFSKLKEIGNMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSV
LAALSQAVCLTPPGQEFPPSVIDAGKGMSTESRRGWLEEKGLILKQTYCEMPNYDVIIPV
LLKEGIDELPNYCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHIL
ENGEVRIFSRNQEDNTSKYPDIISRIPQVRKESVHCCVLDSEAVAWDREKKQIQPFQVLT
TRKRKDVDASEIKVQVCVYAFDLLYLNGESLVKEPLSRRRALLRESFVEKEGEFVFARSL
DSDNTETIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLEGVGDTVDL
CVIGAYLGKGKRAGSYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYNFLKDHILPK
PRPYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPIYKAAMGLVDPEKGISLRFPRFLRIR
DDKKPEDATTGAQIADLYKKQQQIQNQGDKPDLEDYY
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatagcgtctttttttcagccagtgaaatgtaaggagaagaatgacgga
ccggttaaagggaagtctgaaccagttaaaagccccctcaaaactcagaatggtgagaag
gaatgtgattccccagtgaagaagacgagcaaacgcagccgaccaatcatagatagtgat
gacgaagacctgccaacagtaaaagacgttgcttccacacaggacagagaccaagcggtc
aagccagacaaggagaaaactgatgtttttaaggccactcccagcccactttcgccaaaa
cctgttgctacgccaacaacccctgtcaccccagccacccctgctgtttcgggagattca
ggcacccctggaacacctgttacaccgacatccacatcaccctctggcatcccaaaacgc
aagactgcccgtaagcaatttcccaagagaaagttggacaacaggagtgatggagagaga
gaaaaggaggaggaagagaaggaaggaaacgagagagaggaaggacaggagagtaaaaga
gcacggatagaaagatctgctgaccaggcggcagggaacgaggaagaggcaatggagctt
gaggaaaagaatgtaaatgaaaagaccatagaggaggaacagaaagagaagaaggatgag
aagatggatgaagggattggtagtggagtaaaagaagagacaaataaacagagtgatgaa
aatgaagttgaacaggacgaagagaaagatggagtgaagaggaagaatggtgatgtgggt
aaagtgaaggaggaaaaatgcagtcctgaaagattaacaaaggaagggatgaatgcagat
gaggacaagagagagggatctgctaagaaaaaacctatcagcagtttctttgcacccaga
aaggctgcagtgaagctggaaaaatcagaagaaaggaacgatggagagaaaaagaaggat
gaagggaaggctgctactgtgcatgaggagaaagaaaagaaaggtgaaaagggagcggag
cctgcaaatcagagccagtacgatccttcgaaagctcattaccatcccattaacgatgcc
tgctggaagaaggcccaaaaagttccatatcttgctgttgctcgtacctttgaaaagatt
gaggaagattctggcaggttgagaaacattgagacgctgtctaacctgctccgatctgtc
atcctgctctctccagatgatctgctgtgctgtgtttacctgtgcctgaatcagcttggc
cccgcctaccaggggctagagctaggcgtcggagagacggtgctgatgaaggctgttgcc
caggcaactgggcgacaactggaaaaaatcaaagcagaggcccaggaaaaaggtgacctg
gggttggtggctgagagttcccgtagcaaccagagaatgatgtttgcaccagcaaatctg
acggcgacaggcgtgttcagcaaactgaaggaaattggcaacatgagtggcaactcagct
atgaataagaaaatcgacatcattaagggtctgtttgtggcttgtcgtttttcagaggcc
agatacattgtgcggtcattggcagggaagctgaggattggattggctgagcagagcgtt
ctagcagctctgagtcaggctgtgtgtctgactccaccaggtcaagagtttcctccaagt
gtaattgatgcaggaaagggaatgagcacagagagccgcagaggatggctggaagagaaa
ggactcattctaaaacagacttactgtgaaatgccaaattatgatgtcatcattcctgtc
ctgttaaaggaaggcatagacgagctgcccaactactgcaaactcactccaggtgtgccc
ctgagacctatgttggctcaccccactaaaggagtgggggaggtgatgaagaggtttgat
gaggccgctttcacgtgcgagtacaaatacgacggagagagagcacagattcatattctt
gaaaacggagaggttcgtattttcagccgaaatcaagaggacaacaccagcaaataccct
gacatcatctcacgaatcccacaggtaaggaaggaatcagtgcattgctgtgtgttggac
tcagaggctgttgcgtgggacagagagaaaaaacagatccaacctttccaggtccttacc
acacgcaagaggaaggatgtggacgcgtctgagataaaggtgcaggtgtgtgtgtacgcc
ttcgacctcctgtacctgaacggagagtctctggtgaaggagccgttgagtaggcgtcgt
gctctgttgagggagagttttgtggagaaggaaggagagtttgtgttcgctcgttctctc
gactctgacaataccgagaccattgctgagttcctggagcagtctgtacgagactcttgt
gaaggcttgatggtgaagactctagagaaagatgccacttacgaaattgctaaacgctct
cacaactggcttaagctgaagaaagattatctggagggtgtaggggacacagtggatctg
tgtgtgattggtgcatacctggggaagggcaagagagctggcagctatgggggattcctg
cttgcctgttacgatgaggagaacgaggagtttcaatctgtttgtaagataggaactggc
ttcaaggatgaagatctggagcagcattacaattttttaaaggaccatatcctccccaaa
ccccgaccgtattaccgagtggatcaatcagcagagccggatgtttggcttgacgctgta
caagtgtgggaagtgaaatgtgcggacctgtcactgtctccgatctacaaggcagcaatg
ggattggtggacccagagaaagggatttctcttcgcttcccccgtttcctccgcatcaga
gatgacaagaagccagaggatgctactactggagcacagatcgctgatctctataaaaag
cagcagcagattcagaatcaaggggacaaacctgatctggaggattactactga
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