Colossoma macropomum (tambaqui): 118805408
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Entry
118805408 CDS
T09004
Symbol
gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03022
Basal transcription factors
cmao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118805408 (gtf2h4)
09124 Replication and repair
03420 Nucleotide excision repair
118805408 (gtf2h4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmao03021
]
118805408 (gtf2h4)
03400 DNA repair and recombination proteins [BR:
cmao03400
]
118805408 (gtf2h4)
Transcription machinery [BR:
cmao03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
118805408 (gtf2h4)
DNA repair and recombination proteins [BR:
cmao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
118805408 (gtf2h4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
118805408
NCBI-ProteinID:
XP_036422070
LinkDB
All DBs
Position
Unknown
AA seq
466 aa
AA seq
DB search
MKLRVQLQCKNLHEYLRELSPEILDRLYNHPATCLAVYRELPSLAKNYVMRMLFLDHALP
QAAVALWVKKDSQKDHDQCVSVLTGLRLWHNQQLQGGLQGIVLNPVFKDNLRIALLGGGK
AWADEGSSLGPDRHARDVESLDRYAMERWEVILHFMVGSPSAAVSQDLAQLLIQAGLMKS
EAGEAPCITSAGFQFLLLDTASQLWYITLQYLKTVQSRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLQTFLQHLREFGLVFQRKRKSRRYYPTRLAITLAAGVTANPSSSSSSTAMS
ATPGTGESGFIVVETNYRVYAYTSSELQIALVALFSEMLYRFPNVVVAQITRESVQQAIA
NGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLQFTEGVLYNQFLSQA
DFEVLRDRAQGLGVLVWQNAPHRVMVVTPHGHSEVKRFWKRQKSHT
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaagctccgagtacaactgcagtgcaagaacctccatgaatacctgagagaactgagc
cctgagatcctcgacagactctacaaccacccagcaacatgcctggctgtttacagggag
ctcccatcactggccaagaattatgttatgcgcatgctgttcctggatcacgctctgccg
caggcagccgtggctttatgggtcaaaaaggacagccagaaggatcatgaccagtgtgtg
tctgtgctgaccggactcagactgtggcataaccagcagcttcaggggggcctgcagggc
atcgttctgaaccctgtgttcaaagacaacctgaggatagcactgctcggcggtggcaag
gcgtgggcagatgagggcagtagccttggccctgatcggcatgcgcgggatgtggagagc
ctggatcgttatgctatggagcgctgggaagtgatcctgcacttcatggtgggctccccc
agcgcagcggtcagccaggacctggcccagctcctcattcaggctggcctcatgaaaagt
gaggcaggtgaagctccgtgtatcacttcagccgggtttcagttcctcctgctggacacg
gcctctcagctgtggtacatcactctgcagtacctcaaaacagtgcagtctagagggatg
gacctcgtggagattctttccttcctgttccagctgagtttctccactcttggcagggac
tattctgtcgagggcatgagcgagtctttgcagacgtttctccagcacctgcgggagttt
ggcctggtttttcagagaaagaggaagtcgcggaggtattaccctacaagactggctata
actttagctgcaggtgtgactgccaacccttcatcatcatcctcctccactgctatgagc
gctacacctggaacaggagaatctggctttattgtggtggaaaccaactatcgtgtatat
gcttacacaagctcagaactgcagattgctctggttgctctcttcagcgagatgctctat
cgctttcctaacgtggttgtggcccaaatcaccagggagtctgtgcagcaggctatcgct
aatggcatcactgcacagcagatcatccactttctgaggacaagagcacatccagtgatg
ctcaaacagactccggttcttcccccgactatcacggaccagatcagactgtgggagctt
gaaagagatcggctacagtttacagaaggagtattgtacaaccagttcctgtcgcaggct
gattttgaggttctgcgggacagagctcagggtttgggcgtgctggtgtggcagaatgca
cctcacagggttatggtggtcacaccccatggacacagcgaggttaagaggttctggaag
agacagaagagtcacacatag
DBGET
integrated database retrieval system
