Colossoma macropomum (tambaqui): 118819946
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Entry
118819946 CDS
T09004
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118819946 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmao03041
]
118819946 (ddx46)
Enzymes [BR:
cmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118819946 (ddx46)
Spliceosome [BR:
cmao03041
]
Complex A
U2 snRNP components
U2 related factors
118819946 (ddx46)
Complex B
118819946 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
118819946
NCBI-ProteinID:
XP_036443859
LinkDB
All DBs
Position
Unknown
AA seq
1053 aa
AA seq
DB search
MGRESRHYRKRSSSRGRSDSRSKSRSPDSKRSKKDERAGSRTRERSRRDRSRSRERRRSR
SRDRKRQRRSRSRERKRSRSRERRRSRSRSKGRRSKSSSPSKSRKHDEGKEKSDSGDQPT
DKKKVKEEKEEEKAEDQDFDQNTLEEEMRKRKERVEKWREEQRKKAMENIGEIKKELEEM
KQGKKWSLEDDDDDDEEGPASVDREGDDEDEKEKDGKTEESAAMETETGEELDPLDAYME
EVKEEVKKFNMGTMRGGNDKKGGMTVTKVVTVVKTKKTPHTTKKKGELMENDQDAMEYSS
EEEEVDLQTALTGYQTKQRKILEPVDHQKIQYESFRKNFYVEVPELAKMTPEEVNEYRLE
LEGITVKGKGCPKPIKTWVQCGTSMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIA
KTGSGKTIAFLLPMFRHILDQRPLEEGEGPIAVIMTPTRELALQITKECKKFSKPLGLRV
VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVVDEADRMFD
MGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILTKPVEVQVGGRSVVCSDVEQH
VIVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQY
DRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNK
GYAYTFITEEQARYAGDILKALELSGSPVPPELEQLWVTFKEQQKAEGKSIKSSSGFSGK
GFKFDETEHALANERKKLQKAALGLHDSDDEDTALDIDEQIESMFNSKKRVKDLSAPGGS
AGVAAPGFTGATATAGLAGLAAPSAGNIQKLEIAKKLALKINAQKNLGAEAQDVMQQATN
AIMRGGTIIAPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQAETVKRYEEELEI
NDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAV
QKAKAEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcgagtcgaggcactacaggaagcgctcctcgtcgagggggagatccgacagt
cggtcaaaaagtcgttctcctgattcaaagcgctcgaagaaggacgagcgagccggctct
cgcactcgcgagaggagcaggagggatcggtcgaggagcagagagaggaggagatcacgc
tccagagacaggaaacgccagaggcggtcgaggagtcgagagcggaagcgatccaggagt
cgggagcgcagaaggtccaggagtcgaagcaaagggagaaggtcaaagtcttccagtcct
agcaagagtagaaaacatgatgagggcaaggagaagtcagacagtggagaccagcccaca
gacaagaagaaagtcaaagaggagaaggaggaggagaaggctgaagaccaagactttgac
cagaacactctggaggaggagatgaggaagaggaaggagcgtgtggagaagtggagggag
gagcagaggaaaaaggccatggagaacatcggagagatcaagaaggagctggaggagatg
aaacagggcaagaagtggagcctggaggacgatgacgatgatgatgaggaaggtccagcc
tcagtggaccgtgaaggagatgatgaggatgagaaggagaaggacgggaagacggaggag
agcgcagcgatggagacagaaaccggagaggagctggatcctttagatgcctatatggaa
gaggtgaaggaggaagtcaaaaagttcaacatgggcacgatgagaggtggaaatgacaag
aaaggtggaatgaccgtgaccaaagttgtaactgtggtaaaaacaaagaagacgcctcat
accaccaagaagaaaggagagttaatggagaatgaccaggatgccatggagtattcgtct
gaggaggaggaggtggacctgcagaccgccctcaccggctatcagacaaagcagcggaag
attctagagcctgtggatcatcagaagatccagtacgagtccttccggaaaaatttctac
gtagaagttcctgagctggccaaaatgacaccagaggaggtaaacgagtaccgtcttgag
ctggaaggcatcacggtgaaaggaaagggctgtccgaaacccatcaagacctgggtgcag
tgtgggacgtccatgaaagttttaaacgcccttaaaaaacacaactatgaaaagcccact
ccgatccaagcacaggcgatccctgccatcatgtctggacgggacctcattggaatcgca
aagactggaagtgggaagaccatcgcctttctcctgccgatgttccgccacattttagac
cagaggccgctggaggaaggagaaggccccattgctgtgatcatgaccccgaccagagag
ctggccctgcagataacgaaggagtgcaagaagttctctaagccgttggggctgagggtg
gtgtgtgtgtatggaggcaccggaatcagtgaacagatcgcagagctgaagcgaggagcc
gaaattatagtgtgcacaccaggtcgaatgattgacatgttaggagccaacagcggccga
gtcaccaacctgcggagggtgacctacgtggtggtcgatgaggccgaccgcatgttcgac
atgggcttcgagccgcaggtgatgcgtatagtggacaatgtcaggccagaccggcagaca
gtgatgttctctgccaccttcccacgagcgatggaggccttagccaggaggatcctcacc
aaacctgtggaagtgcaggtgggagggaggagcgtcgtgtgctcggatgtggagcagcat
gtgattgtgattgaggaggacaagaagttcctgaagcttctggagattctcggtcattac
caggagaaaggttctgtgatcatctttgtagacaaacaggaacatgctgacggtctgctc
aaagacctgatgaaggcctcctacccctgcatgtctctgcacggaggaatcgaccagtat
gacagagacagcatcataaatgattttaaaaacggagcctgtaggctcatggtggccacc
tcggttgcggccagagggttggacgtcaagcagctgatccttgtggtcaactacagctgt
cccaaccactatgaagactatgtgcatcgggccgggcgcacgggcagagctggaaacaaa
ggctacgcctacacgttcatcactgaggagcaggcgcgctacgctggtgacatcctcaaa
gctctggagctgtcaggttccccagttcctcctgagctggagcagctgtgggtcaccttc
aaagagcagcagaaggctgaaggcaaaagcatcaaaagcagcagtgggttttcagggaag
ggctttaagtttgacgagacggagcacgctctggccaacgagaggaagaaactgcagaaa
gccgcgctgggtcttcacgactctgatgatgaagacacggcgctggatattgatgagcag
atcgagagcatgtttaattctaagaagcgggtgaaggacctgtcggctccgggcggcagt
gccggtgtagccgctcccgggttcactggagccacagctactgcgggtcttgctggtctt
gctgcaccttcagccggaaacatccagaaacttgagatcgccaagaagctggcactgaag
atcaacgctcaaaagaacctgggtgctgaggcgcaggacgtaatgcagcaggccaccaat
gccatcatgagggggggcaccatcattgccccgtccgtctccgccaaaaccatcgccgag
cagctggctgagaagatcaacgctaagctcaactacacccctgtggagaagctggaggaa
gagcgacaggctgccgagcaggccgagaccgtcaagaggtacgaagaggagctggagatc
aacgacttccctcagacggccaggtggaaggtcacgtctaaggaggccctgcagaggatc
ggcgagtattctgaagctgccatcaccatccgaggaacgtacttcccgcccggcaaagag
cccaaagagggagagcgcaagatttatctggctatcgagagtgccaatgagctggcagtc
cagaaggcaaaagcagaaatcaccagactcatcaaagaggagctcatccgcctgcaaaat
tcataccagccgaccagcaaagggcgatacaaggttctgtag
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