Celeribacter marinus: IMCC12053_422
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Entry
IMCC12053_422 CDS
T04098
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cmar
Celeribacter marinus
Pathway
cmar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IMCC12053_422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmar03400
]
IMCC12053_422
Enzymes [BR:
cmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IMCC12053_422
DNA repair and recombination proteins [BR:
cmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IMCC12053_422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
SecA_DEAD
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALI54371
UniProt:
A0A0N9ZDN3
LinkDB
All DBs
Position
complement(421485..424982)
Genome browser
AA seq
1165 aa
AA seq
DB search
MAFSSKSNTAHVQIGGAPEGFDAYLLAREVAKSDAPVIHVARDDKRLAALKAALAFFAPD
LPVIDFPAWDCLPYDRISPNADVSASRMATLAALAHGAMPKRYVLLTTLAAATQRVPAKE
TLDGAAFSLRKGQRVNEEALRGFFVRMGFTQAPTVVEHGDYAIRGGIIDVFPPGHDAPVR
LDFFGDELDGLRRFDPATQRTTETLDAITFTPVSEVILDDAAITRFRQAYRIEFGAAGTD
DPLYEAVSAGKKHAGLEHWLPFFHDHLATLFDYTPEATIALDDQTTAARLARWDGIADQY
DSRREAMTSKKRLDSVYKPCPPALLYLDDAAWEAEIAGRRVLHFHPSAQATGLGVIDAGG
RIGRNFAPERQQEKLDLFGALSEHIHAKRQNGHVVMASWSEGARDRLQTLLEDQDLVDTT
LISDWRDVPSGKGGVFLTIWPLDEGFEAPTEAADHVTVISEQDVLGDRLIRRPGRKKRAD
NFLTEHSALSAGDLIVHVDHGVGIFRGLEIITALGAAHECLLLEYAGGDRLYLPVENIEL
LSRYGNEEGLLDKLGGGAWQSKKAKLKERIREVAEKLIRIAAERQLRKADILVPPDDMWE
AFCARFPYDETDDQLKAIEDVLDDLEAGLPMDRLVCGDVGFGKTEVAMRAAFVAALCGQQ
VAVIAPTTLLARQHYRSFAERFRGFPINVRPMSRFVSQKEMTQTREGLLSGEVDIVVGTH
ALLAKNVKFHDLGLLIVDEEQRFGVTHKERLKSMKSNIHVLTLSATPIPRTLQMSMTGVR
DLSIIGTPPVDRLAIRTYVSEFDTVTIREALLREHYRGGQSFFVVPRITDIPEIEQFLTD
NVPEVRFVVAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGIDIPTANTMVIHRADMF
GLSQLYQIRGRVGRAKTRAYAYLTTKPRAPLTDTARKRLRVLGSLDTLGAGFTLASQDLD
IRGAGNLVGEEQSGHVKEVGFELYQSMLEEAIAKIKSGQEGVTLDDDGAWAPQINLGVPV
LIPEVYVPDLDVRLGLYRRLSGLHTKVELEGFAAELIDRFGKLPKEVNTLLLVVRIKEKC
RAAGIARLDGGPKGATIQFHNDKYANPVGLMEFIHDQKGQAKVKDNKIVVRRDWKTDRDK
IKGAFAIAQDLARHAKSATQVPKKA
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
gtggctttctcatccaaatcaaacaccgctcatgttcagattggcggcgcgccagagggg
tttgatgcctatcttcttgcgcgggaagtggccaagtcagacgcccctgtgatccacgtg
gcccgcgatgacaaacgccttgcggcgctcaaagcggcccttgcgttctttgcacccgat
ctgcctgtgatcgactttcccgcgtgggattgtctgccgtatgaccggatttcacccaat
gccgatgtgtccgcctcccgcatggcgaccttggctgcgttagcgcatggggcgatgccc
aaacgctatgttttgttgaccacattggccgcagccacacagcgtgttcccgccaaagag
acattggacggggccgcgttttcactgcgcaaaggtcagcgggtcaacgaggaggccttg
cgcggcttttttgtccgtatggggttcacgcaggcgccaacggttgtcgaacacggtgat
tatgccattcgcggcggcatcattgatgtgtttccaccaggccatgatgcgcctgtgcgc
ctcgatttctttggggatgaattggacggattgcgccgctttgatccggcgacacagcgc
accaccgagacactcgatgcgatcacgttcacgcctgtgtccgaggttattttggacgat
gcggcgatcacgcggtttaggcaagcctaccggatcgagtttggggcagcgggcaccgac
gatcccctctatgaagctgtttccgcagggaaaaagcatgcaggccttgagcattggttg
ccgttttttcacgaccatttggccaccttgtttgactatacgccagaggcgacaattgca
ttggatgaccagaccacagcggcgcggttggcgcggtgggacgggattgccgatcaatac
gacagccgccgtgaggcgatgacctcgaaaaagcgccttgatagtgtgtataaaccctgt
ccgcctgcgttgctttatctggatgatgcggcgtgggaggcggaaattgcgggccgtagg
gttcttcatttccatccctcggcgcaggccacaggtcttggtgttattgatgcaggtggc
cgcattggccgcaactttgcacccgagcgccaacaagaaaaactggatcttttcggggcg
ttatccgagcatattcatgcaaaacgtcagaatggtcatgtggtcatggcctcatggtcc
gagggcgcgcgcgaccggttgcagacgctgctcgaggaccaagatctcgttgatacgacc
ctgatttccgattggcgcgatgtgccgtccggaaagggtggcgtgttcttaaccatttgg
ccgcttgatgaagggttcgaagccccaacagaggccgcagatcacgtcacggtcatctcg
gaacaagatgtgttgggcgaccgcctcatccgacgacctggccgcaaaaagcgggcggat
aatttcctcacggagcattccgcgctttcggcgggagatttgattgttcacgtggatcac
ggggtcgggatttttcggggccttgagatcatcaccgcgttgggtgcggcgcatgaatgc
ctgttgttggaatatgcgggcggagatcgtctttaccttcctgttgaaaacattgaactt
ctgagccgttatggcaacgaagaggggttgctcgacaagttgggcggcggcgcgtggcag
tccaaaaaggccaagctgaaagagcgcattcgtgaggtcgctgaaaagctgatccgcatc
gccgctgagcgtcagttgcgcaaagcggatattttggtgccacccgatgacatgtgggag
gcgttttgcgcccgttttccctatgatgaaaccgatgatcagctcaaagcgatcgaggac
gtgttggacgatctggaggcgggtcttccgatggaccgtctcgtgtgtggcgatgtcggg
tttggcaaaaccgaagtcgcgatgcgcgcggcctttgttgcggcgctttgtggtcagcag
gttgcggtgatcgcaccgaccacattgttggcccgtcaacactatcgctcttttgccgaa
cgcttccgtggctttccgatcaatgtgcgcccgatgtcacgttttgtgagccaaaaagag
atgacgcaaacccgcgaggggcttttgtcaggtgaggttgatatcgtcgttggcacccat
gccttgcttgcaaaaaacgttaagtttcatgatcttggcctgttgattgtcgatgaggag
caacggttcggcgtgacgcataaagagcgcctgaagtcgatgaaatccaacatccacgtc
ctgacgctatcggccacgccgatcccgcgcaccttgcaaatgtcgatgacgggcgtgcgt
gatttgtcgattatcggcacgcctcccgtcgaccgtttggccattcgcacctatgtcagt
gagttcgataccgtgacgatccgcgaggccttgctgcgcgagcattaccgtggggggcag
tcctttttcgtggtgccgcgcatcaccgatatccctgaaattgaacagtttttgaccgat
aatgtgcccgaagtccgctttgtcgttgcccacggccagatggctgcgggtgagcttgat
gaccggatgaacgccttttatgacggtaagtatgatgtgctgttggccaccacaattgtg
gagagcggcattgatattccgactgccaacacgatggtcattcaccgcgcagatatgttc
ggcctgtcacagctctaccaaattcgcggacgggtcgggcgcgccaaaacccgtgcctat
gcttatttgaccaccaagccgcgcgcgccgttgaccgataccgcgcgcaaacggttgcgt
gtgttgggatcgctcgacacccttggtgcgggcttcacgcttgccagtcaggatctcgat
attcgcggggcgggcaatctggtgggcgaggagcaatcgggccacgtcaaagaggtcggg
ttcgagctgtatcaatccatgctcgaagaggcgattgccaagatcaaatctggccaagag
ggtgtgacgctggacgatgatggcgcatgggcgccacaaatcaatcttggcgttcctgta
ttgattccagaggtttacgtgcctgatcttgatgttagattgggtctgtatcgccgtttg
tctggactgcacaccaaagtcgagttggagggatttgcggcggaattgattgaccggttt
ggaaaattacccaaagaagtcaataccttgctgcttgttgttcgcattaaggaaaaatgc
cgcgccgcagggattgcacgccttgatggcggtccgaaaggggcgacgatccagttccac
aatgataaatatgcaaatcctgtaggtctgatggagtttatccacgaccaaaaaggacag
gcaaaggtcaaggacaacaagatcgtagtccgccgcgattggaaaaccgatcgtgacaag
atcaagggcgcgtttgccattgctcaagaccttgcgcgccacgcgaagagcgccacgcaa
gtccctaaaaaggcataa
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