Cucurbita maxima (winter squash): 111471962
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Entry
111471962 CDS
T05246
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03013
Nucleocytoplasmic transport
cmax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111471962
03015 mRNA surveillance pathway
111471962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111471962
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111471962
mRNA cycle factors
P-body specific factors
111471962
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
111471962
NCBI-ProteinID:
XP_022973412
UniProt:
A0A6J1I7G4
LinkDB
All DBs
Position
Unknown
AA seq
513 aa
AA seq
DB search
MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNWCYFRPGKTSQKEQRYARAYIDF
TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI
GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS
MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS
EGDGKRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV
SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKD
DGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSGS
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccgttggagaggaccaaagtagtgattaggcacttgcccccttctctccct
cactcagatctcttccaccatattcatgatcgcttcgccggtcgctacaattggtgttac
tttcgtcccggaaagaccagtcagaaggagcagaggtacgctcgagcctacatagatttt
accatacctgaagatgtttttgagtttgcggagttttttgatggccatgttttcgtcaat
gagaagggtgctcagtataaggctgtagttgaatacgcaccttcacagcgtgttccgagg
tcatcttctaagaaggatggtcgtgaggggactatatacaaagatccagattatttggag
tttttaaaactcattgccaagcctgctgagcatcttccaagtgcagaaatacagttggaa
agaaaagaagcagagcaatctggtgttgcaaaagatactccaattgttacccctctcatg
gagtttgttcgccagaaacgagcagttgaaagtggaactcagggatcatcagtgcctcgg
aaggttaaaagaggtgttgcagcatcctctagaaaacatgagtcgaattccatgaagcga
gggatggagaagaagaagtatattttaaaggacagtgggaagaacacaaaccgcagagac
aagtcaaatttcattttggtgccgaggcgagaggatcagtcagccacttcaagtggaatt
ggaatttctgacgttggtacagccgactctggaaagaaaaaaattctgcttctcaaaggg
aaagggcgagacgtatctcatattgctgatggcatgttacagtttcagagcgcgacatct
tctgggaattctcctgctaatgctacaaaacagaatcagaggcgtgaggctggtggaagc
atgatcagaagcattcttttaaataatgatgcacgtcatggacagagttcatcagtagcc
cagtctcaccaaaaaattcagatcctgaactcagacaatgggaagcgaccacctcgtccc
attaattctcgatctgggtctaatgatatgtccagtaatgatccaaatccatctggttca
gaaggggatggaaaaagggctatggaaaataagtttaacaaaaaggaacatcatggcctg
ggtaatgctagtgagaagcaagaaaaacgaattagaaacaaagatagacctgatcgtggg
gtttgggcaccacgtggtcgttcagatgcctcagtctcacaacttgatgaatcctctgtt
tcacaatctactcatttgctttctgactcggttgaagcataccgtggggaaatgaaagat
gatgttcatggaagcaggactggggatgttacaaccactgtgagtggacgtagcagttca
gtggagaatggttctgttagacatgttgggcgtcgtggggctgtccatattatgaaggat
gatggatctttgaacccaaatgaaggaaaaccatccaaaagaggtgttgcaggtggccat
gagaaacaagtatgggttcagaagtcatcttcaggttcttaa
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