Cucurbita maxima (winter squash): 111491798 Help Entry 111491798         CDS       T05246                                  Name (RefSeq) DNA ligase 4   KO K10777   DNA ligase 4 [EC:6.5.1.1] Organism cmax  Cucurbita maxima (winter squash) Pathway cmax03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:cmax00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     111491798  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:cmax03400]     111491798 Enzymes [BR:cmax01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      111491798 DNA repair and recombination proteins [BR:cmax03400]  Eukaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     DNA Ligase 4 complex      111491798 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N BRCT_2 DNA_ligase_A_C BRCT PTCB-BRCT RNA_ligase DNA_ligase_IV Motif Other DBs NCBI-GeneID:  111491798 NCBI-ProteinID:  XP_022996609 UniProt:  A0A6J1K974 LinkDB All DBs Position Unknown AA seq 1209 aa AA seqDB search MTELIKFSVLSSLFDWIQRSKSSAKKRSKFRKFIDTFCSPADYFSAIRLILPSLDRERGT YGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANVGNFALVAAEVLQRRQGMT PGGLLIKELNDLLDRLALSENRAEKTAVLSTLIQKTNAQEMKWIVMIILKDLKLGVSEKS IFHEFHPDAEDLFNVTCDLKLVCEKLRDRRQRHKRQDIEVGKAVRPQLASRVSNANAAWK KLHGKEVVVECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYGHGMSDVIVQNVLATRCILD GEMLVWDKSLNRFAEFGSNQEIARAAKDGFDSNRQLCYVAFDVLYVGDTSVIHRSLKERH ELLRDVVKPVKGQLEILVPNGGLNSDCAGDPPWSIRAYNVDDVERFFKSTIENRDEGIVI KDLSSKWEPGDRSGKWLKLKPDYIHAGSDLDALIIGGYYGSGRRGGEVAQFLMGLAEHPP SNAYPRRFISFCRVGTGLTDEELDSVVNKLKPYFRKSEYPRKTAPSFYQVTNNSKERPDV WIESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIHRVRYDKPWHECLDVQSFVELVHS SNGTTQRGTNNSGWQDSKRKDINSTGKGRKKSVSVVPSHLLQTDISGIKGDSLIFSNMLF YIVNVPPTHSLDSLHKLIVENGGTFSMNLNNSVTHSVAADSKGIKYEAAKRHGDVIHYSW VLECCSQKKLLPLMPKHFLFLSGHSKKKLEEEIDEFSDSYFWDLELADLKQLLSNVSRSE DVKAIDYYREKYCPKHEWCIFSGCQIYFHPLKPSLKSDWDSLLELSVRRLKVEVSFRGGK VSDDRVSATHIVVFCIPGPPVKCEAVLKSCNEADKHVMLKDKTHIVAHQWLEDCLERAQR LQEDAYSLNPNTKKSIEKLNSGIGSETPSASENIDNQQIPSPSKEYKDLGGNESASGQHM LSHSTKRSGGKKRGRPAESSMQKGKSSIEQVRRVFPRRTKGPAKINEVESDSSDHTNEKT NAETGNIGTLCSESFGKNEFRMLENERPVKKKRGSPARNTQKGKARVEQVRRTRARIAKG DGSDYTDVKKNAEEAEMERGNVGTVCKDNSKTEELKMLEDCDWKQKGKAIEQSDVADPKS KNSEKLEVMTDPLQAMLLDMVPSLGMSQTKSSSSSSSVLEEKQPVHNNSEPAKKKVSYKD VASELLKDW NT seq 3630 nt NT seq  +upstreamnt  +downstreamnt atgacggaactgatcaagttcagtgtgctttcaagtctgtttgattggattcagcgaagc aagtcttccgccaagaagcgttccaagtttcgtaagtttatcgacaccttctgcagtcct gctgactatttttctgccatccgcttgattctgcccagcctcgatcgagagcgcggcacc tatggcctcaaggagtctgtactcgccacttgccttattgacgctcttggcatgtctaga gagtctgaggacgctcttcgtcttatcaactggcgcaaaggtggtgctaagactggtgct aatgtcggtaatttcgctcttgttgcggctgaggtattgcagcgtaggcaaggaatgacc cctggtggtctattaattaaagagttgaatgatttgctggaccgtttggctttaagtgaa aacagagcagagaaaaccgcagttctgtctacacttatacagaagacaaatgcacaggaa atgaaatggattgtcatgataatcctcaaagatctgaaactgggagtcagtgaaaaaagc atttttcatgagtttcatccagatgcagaagacttattcaatgtcacttgtgacttaaaa ttggtttgtgaaaaactaagggatcgtagacaaaggcataagcgtcaggacattgaagtt ggtaaagctgtacgacctcagttggcttcaagagtgtccaatgcaaatgctgcatggaaa aagcttcatgggaaggaagttgtagtcgaatgcaagtttgatggtgaccgtattcaaatt cataagaatggaactgaaatacactacttttcaaggaactttctcgatcactcagaatat ggacatggaatgtctgatgttattgttcaaaatgttcttgccactaggtgtatacttgat ggtgaaatgttggtgtgggataaatctttaaaccgttttgcagagtttggctccaaccag gaaatagcgagggcagcaaaggatggatttgacagcaatcgtcagttatgctatgtcgcg tttgatgttctttatgttggagatactagtgttattcacaggagtttgaaagaaaggcac gaacttctcagagatgttgtcaagcctgtgaagggtcaattggaaatcttagtacctaat ggtggtcttaatagtgactgtgctggggatcctccttggtcaatcagagcttataatgtt gatgacgtggaaaggttctttaagagtaccattgaaaatagagatgaaggtattgttatt aaggacctgagttctaaatgggaacctggtgatcggagtgggaagtggttaaaattaaag cctgactacattcatgcaggatctgacttggatgccctcatcataggaggttactacggc tctggacggcggggtggggaggtcgctcaatttttaatgggtcttgctgagcatccaccc tcaaatgcatatcccagacggtttatttccttctgcagagtaggaactggacttactgat gaggagttagattctgttgtaaataaactgaagccttattttcggaaaagtgaatatcca aggaagactgcacccagcttttaccaagttacaaataattcaaaagaaagaccagatgtt tggattgaaagccctgagaagtcaatcatactttccattaccagtgatatacgaactata aaatctgaggtctttgcagctccatatagcctaagatttccacgcatacaccgtgttcga tatgacaaaccttggcatgaatgtcttgatgttcaatcttttgtagagcttgttcattca agtaatggtaccacacaaaggggcacaaataatagtggctggcaagatagtaaacgaaag gacattaattccactggaaagggaaggaaaaagagtgtttctgttgttccttctcattta cttcagactgatatttcaggcattaaaggggactccttgattttctcgaatatgttattt tacattgttaatgtgcctccaacccattctctcgattccttgcacaaattgatagtggag aatgggggcacattctctatgaatttgaataattctgttacacactctgttgcagctgat agcaaaggcatcaaatatgaggctgccaaacgtcatggagatgttatacattattcttgg gtgttggaatgttgttcccagaagaaactactacctctaatgcccaagcattttctcttt ctctctggtcactcaaagaaaaaattggaggaggaaattgatgaattttctgactcgtac ttctgggatcttgaacttgcagacctgaaacagctattaagcaacgttagtagatcagaa gatgtgaaagctattgactactacagggaaaaatattgtccaaaacatgaatggtgtatt ttttctgggtgccaaatttactttcatcctttaaaaccatctttgaaatctgattgggat tccctgttggagctttcagtaaggaggttgaaggttgaagtttccttcagaggtgggaaa gtcagtgatgatcgtgtttctgctacccacattgtagtcttctgtatacctggaccgcct gtaaaatgtgaagcagtgttgaaaagttgcaatgaagcagataaacatgtcatgctgaag gataagactcatattgttgcacatcagtggttggaagactgtttggagagggcccaaagg ttgcaagaagatgcatatagcttgaatcccaatacgaaaaagtcaatcgaaaagttaaat tctggaataggctctgagacaccatcggcctcagaaaatatagacaatcagcaaattcct tctccttccaaggagtataaagatctgggaggaaatgaatctgcttcaggacaacacatg ctctcacattcaactaagagatctggtggaaagaaaagaggaaggcctgctgaaagtagc atgcaaaaagggaaatcgagtatcgaacaagttcgaagagtttttccccgaagaaccaag gggcctgcaaaaataaatgaagttgaatcagacagcagtgaccatactaacgaaaagaca aatgcagaaactggaaatattggaacactctgcagtgaaagctttggaaagaacgagttt cgaatgctagaaaacgagagacctgtcaagaagaaaagaggaagtcctgcaaggaacaca caaaaagggaaagcaagggtggagcaagttcgaagaactcgggcacgtatagccaagggg gacggcagtgactataccgatgtgaaaaagaatgcagaagaagctgaaatggagagagga aatgttggaacagtatgcaaggataactcaaaaacagaggagcttaaaatgctagaagac tgtgattggaaacaaaaggggaaggccattgaacaaagtgatgttgctgaccccaaatcc aagaattctgaaaagcttgaagtcatgactgatcctcttcaggccatgttattagatatg gttccaagtctaggaatgagtcaaactaaaagtagcagcagcagcagttctgttcttgag gagaagcaaccagtacataacaattctgagccagctaagaagaaagtgagctacaaggac gttgccagtgaactgcttaaggattggtaa

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