Cucurbita maxima (winter squash): 111493405
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Entry
111493405 CDS
T05246
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03022
Basal transcription factors
cmax03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111493405
09124 Replication and repair
03420 Nucleotide excision repair
111493405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmax03021
]
111493405
03400 DNA repair and recombination proteins [BR:
cmax03400
]
111493405
Transcription machinery [BR:
cmax03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111493405
DNA repair and recombination proteins [BR:
cmax03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111493405
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
111493405
NCBI-ProteinID:
XP_022998882
UniProt:
A0A6J1K980
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH
AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE
FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL
NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG
GSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG
GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL
PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA
TSDD
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatggcgaaaatcggcgattaaatggtgaggctgaagaagaagacgatgatgac
gatgccaatggcggaatggcggcctgggaaaggacttatgccgatgataggtcgtgggaa
gctctacaagaggacgagtctgggcttcttcggccgattgacaataaggccattttccat
gcccaatatcgcagacgtcttcgttcactttcttccttagcaactactgctcgaattcaa
aagggtcttattcgctatctctatgtcgtcattgatttctccagggcagcagcggaaatg
gattttcgaccgagtcgaatggctgtggttgcaaaacatgtggaagcttttgtcagggaa
ttctttgaccaaaatcctctcagtcagattggtttggtgactataaaggatggagttgct
catagcttaacagatcttggtgggagtcctgagtcccatgttaaagcattaatggggaaa
ctggaatgctcaggtgaagcatccttgcagaatggtctggatcttgtttgtggctatcta
aatcaaataccatcatatgggcatagagaagttttaatcttatactctgctctcaattcc
tgtgatcctggagatataatggagacagttcagaaatgcaaaacatctaaaataaggtgt
tcagtaattggtcttactgctgaactttttatatgcagacatctctgtcaggaaaccggt
ggctcatacttggtcgcattggatgagtcccatttcaaagagttgctattagagcacgca
cccccacccccagcaatagcagactctgcaatgcctaatttgatcaagatggggtttcca
caaagagcaggggagagttctattgcgatttgttcgtgtcacaaggaagctaaagttgga
gggggctatacttgccctcgatgcaaagctcgagtttgcgagctgccaactgagtgtcga
atttgtggattgacacttatttcttcacctcatttggctaggtcgtatcatcatctcttt
ccgattataccatttgatgaagtttctgataaactatttcatgatccacgacatcaacta
ccgaaagtttgctttggctgccaagaaaacttcacaaaccctggtacaggtaacagcccc
ggcatccgagtttcttgcccaaagtgcaaacaacacttctgtcttgattgtgatatttat
attcacgagagcttgcacaattgccctggctgtgagagtttcagacgtcccaaatcagcg
acttccgatgattga
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