Clavibacter nebraskensis: CMN_02243
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Entry
CMN_02243 CDS
T02530
Symbol
mfdA
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cmc
Clavibacter nebraskensis
Pathway
cmc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CMN_02243 (mfdA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmc03400
]
CMN_02243 (mfdA)
Enzymes [BR:
cmc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CMN_02243 (mfdA)
DNA repair and recombination proteins [BR:
cmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CMN_02243 (mfdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
CCE76181
UniProt:
M5BAF4
LinkDB
All DBs
Position
complement(2374428..2378060)
Genome browser
AA seq
1210 aa
AA seq
DB search
MILQGLIPALSRASTFDDALASASRDADFSLTEGLQGPLLAGLLRQRIQRGIPGCLFVVT
ATGRESEGMRRSLAAVLPDAEILEFPAWETLPHERLSPSAEIVGKRIHALRRMEQWHAAL
GQGAREVPADQVRPLVIVASVRAALQPVADNLTELAPVQLATGSRGHDLSELAVRLVDLA
YSRVDMVTRRGEFAVRGGILDVFPPVSDHPVRIEFFGDEVDQMRPFAVADQRSLEEEITS
VELPPSRELLLSAPVRQRAREMQHEFPNLQQMLAKIAEGIPVEGMESLAPALVDKLVPVT
HYLPVDAAIAVVSPERVSTRAQSLADTNREFLDAAWNAATAGAQAPIDLASGDFLSLGRL
RDARGPRRWWTLSGFQANDVLPEDLGIDEVMTVRIQADPVPSFAGNADGAIEHARERLAA
GWSVGVVAQGSGLVERADTVLREAGVPARVVEEFPAEPEPGIAYLLRSAIDAGFEMPEVK
LALLTESEFYGRAAGYDSRQVKKLATRRKNVVDPLQLKPGDHVVHTTHGIGRFVELTQRE
VSSGGRNAVKTRREYLVIEYAPSKRGYPGDKLFVPTDQLDLLSRYVGGEEPALSKMGGSD
WAAAKGKARRAVRDIAVELVKLYSARMASRGHSFPPDTPWQRELEEAFPFMETPDQLTVI
DEVKRDMESPIPMDRLVSGDVGFGKTEIAVRAAFKAVQDGKQVVMLVPTTLLVKQHFETF
SERFAGFPVHLRQLSRFQTDKESRETIKGLEDGSVDVVIGTHRLLTGRIAFKDVGLVIID
EEQRFGVEHKDALKKLKANVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTF
VGPNSEKQIAAAIRRELLREGQVFFVHNRVSSINRVASELAELVPEARVAVAHGKMSESM
LEQVIVDFWERKFDVLVSTTIIETGLDIANANTLIIDRADKYGLSQLHQLRGRVGRGRER
AYAYFLYDADKPLSETAHDRLSTIAANNELGSGMQVALKDLEIRGAGNLLGGEQSGHIQG
VGFDLYLRMIGEAVSTFRGDVAEGQTELRLELPVDAHIPEEYVDSERLRLEAYQKLSTAA
SPTATDDQIDRVIEELADRYGEPPVEVDNLVRVSRLRRVAQRAGLSEVVAMGPNLRIAPA
DLADSKQVRLQRMYPGSRLFAQTNAVTVPLPKRDGEPLPDAELVDWVRQLLDAVFVVEPA
PAAKESAPKS
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
gtgatcctccagggcttgatcccggcgctctcgcgcgcctccacgttcgacgacgccctc
gcatcggcctcccgcgacgccgacttctccctcaccgaggggctccaggggccgttgctc
gcggggctcctgcgccagcgcatccagcgcggcatcccggggtgcctcttcgtcgtcacc
gccaccggtcgcgagtccgagggcatgcgccgcagtctcgctgccgtgctgccggacgcc
gagatcctcgagttccccgcgtgggagacgctgccgcacgagcggctcagcccgagcgcg
gagatcgtcggcaagcggatccacgcgctccgccgcatggagcagtggcacgccgcgctc
ggccagggggcccgcgaggtgccggccgaccaggtgcgcccgctcgtgatcgtcgcctcg
gtgcgcgcggccctgcagcccgtcgccgacaacctcactgagctcgcgcccgtgcagctc
gccaccggcagccgcgggcacgacctctccgagctcgccgtgcgcctggtcgacctcgcg
tactcgcgcgtcgacatggtcacacgacgcggcgagttcgcggtgcgcggcggcatcctc
gacgtcttcccgcccgtctccgaccaccccgtgcgcatcgagttcttcggcgacgaggtc
gaccagatgcggccgttcgcggtcgccgaccagcgctcgctcgaggaggagatcacctcg
gtggagctgccgccgagccgcgagctgctgctgagcgcgcccgtgcgccagcgcgcccgc
gagatgcagcacgagttcccgaacctgcagcagatgctcgcgaagatcgccgagggcatc
ccggtggagggcatggagtcgctggcgcccgcgctcgtcgacaagctcgtccccgtcacg
cactacctgccggtggacgcggccatcgccgtcgtctcgcccgagcgcgtgtccacccgt
gcgcagagcctcgccgacacgaaccgcgagttcctcgacgccgcgtggaacgccgccacg
gcgggcgcgcaggcgcccatcgacctcgcgtccggcgacttcctctcgctcggccgcctt
cgggacgcccgcggcccgcgccgctggtggaccctctcgggcttccaggccaatgacgtg
ctgccggaggacctcgggatcgacgaggtcatgaccgtgcgcatccaggcggatcccgtg
ccgagcttcgcgggcaacgccgacggcgccatcgagcacgcgcgcgagcgcctcgcggcc
gggtggagcgtgggcgtcgtcgcccagggatccggcctcgtcgagcgcgcggacacggtg
ctccgcgaggcgggcgtcccggcgcgcgtggtcgaggagttccccgccgagcccgagccc
ggcatcgcctacctcctccgctcggccatcgacgcgggcttcgagatgcccgaggtcaag
ctcgcgctcctcaccgagagcgagttctacggccgggccgccggctacgacagccgccag
gtcaagaagctcgccacccggcgcaagaacgtggtggatccgctgcagctcaagcccggc
gaccacgtcgtgcacaccacgcacggcatcggccgcttcgtggagctgacgcagcgcgag
gtctcctcgggcggccgcaacgcggtgaagacccggcgcgagtacctcgtcatcgagtac
gcgccctcgaagcgcggctacccgggcgacaagctcttcgtgcccaccgaccagctcgac
ctcctcagccgctacgtcggcggggaggagcccgccctcagcaagatgggcggcagcgac
tgggccgccgcgaagggcaaggcccgccgggccgtgcgcgacatcgcggtcgagctcgtg
aagctctactccgcgcgcatggcgtcgcgcgggcactccttcccgccggacaccccgtgg
cagcgcgagctcgaggaggcgttccccttcatggagacgcccgaccagctcaccgtcatc
gacgaggtcaagcgcgacatggagagccccatccccatggaccgcctcgtctcgggcgac
gtcggcttcggcaagaccgagatcgccgtgcgcgccgcgttcaaggccgtgcaggacggc
aagcaggtcgtgatgctcgtgccgacgacgctgctcgtgaagcagcacttcgagaccttc
tccgagcgcttcgccgggttccccgtgcacctgcgccagctcagccggttccagaccgac
aaggagtcgcgcgagaccatcaagggcctcgaggacggctcggtcgacgtcgtcatcggc
acccaccgcctcctcactggcagaatcgcgttcaaggacgtcggcctcgtcatcatcgac
gaggagcagcgcttcggcgtcgagcacaaggacgcgctgaagaagctcaaggccaacgtc
gacatcctcgcgatgtcggccacgccgatcccgcgcacgctcgagatggcggtcaccggc
atccgcgagatgtcgacgctcgcgacgccgccggaggaccggcacccgatcctcaccttc
gtgggcccgaacagcgagaagcagatcgccgccgccatccgccgcgagctgctgcgcgag
ggccaggtgttcttcgtgcacaaccgcgtgtcgagcatcaatcgggtcgcgtcggagctg
gccgagctggtgcccgaggcgcgcgtcgcggtggcccacggcaagatgagcgagtcgatg
ctcgagcaggtcatcgtcgacttctgggagcggaagttcgacgtgctcgtgtcgaccacc
atcatcgagaccggcctcgacatcgccaacgcgaacacgctcatcatcgaccgggccgac
aagtacggcctcagccagctgcaccagctgcgcgggcgcgtcggccgcgggcgggagcgc
gcgtacgcgtacttcctctacgacgccgacaagccgctgtctgagacggcgcacgaccgc
ctgtccaccatcgcggcgaacaacgagctgggatccggcatgcaggtcgcgctcaaggac
ctcgagatccgcggcgcgggcaacctgctgggcggcgagcagtccggccacatccagggc
gtgggcttcgacctgtacctgcgcatgatcggcgaggccgtctcgaccttccgcggcgac
gtcgcggagggccagaccgagctgcggctcgagctgccggtcgacgcgcacatccccgag
gagtacgtcgacagcgagcggctgcgcctcgaggcgtaccagaagctctccaccgcggcc
tcgcccacggcgacggacgaccagatcgaccgggtcatcgaggagctggcggaccgctac
ggcgagccgcccgtggaggtcgacaacctggtgcgggtctcgcgcctgcgtcgcgtcgcg
cagcgggccgggctcagcgaggtcgtcgcgatggggccgaacctgcgcatcgcgccggcc
gacctcgcggacagcaagcaggtgcgcctgcagcgcatgtacccgggcagccggctgttc
gcgcagaccaacgcggtcacggtgccgctgcccaagcgcgacggcgagccgctgcccgac
gccgagctggtcgactgggtgcggcagctgctcgacgccgtctttgtggtggagccggcg
ccggccgcgaaggagtccgcgccgaagtcctga
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