KEGG   Cyanidioschyzon merolae: CYME_CMK235C
Entry
CYME_CMK235C      CDS       T00175                                 
Name
(RefSeq) DNA ligase I
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03030  DNA replication
cme03410  Base excision repair
cme03420  Nucleotide excision repair
cme03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CYME_CMK235C
   03410 Base excision repair
    CYME_CMK235C
   03420 Nucleotide excision repair
    CYME_CMK235C
   03430 Mismatch repair
    CYME_CMK235C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cme03032]
    CYME_CMK235C
   03400 DNA repair and recombination proteins [BR:cme03400]
    CYME_CMK235C
Enzymes [BR:cme01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CYME_CMK235C
    6.5.1.6  DNA ligase (ATP or NAD+)
     CYME_CMK235C
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CYME_CMK235C
DNA replication proteins [BR:cme03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    CYME_CMK235C
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     CYME_CMK235C
DNA repair and recombination proteins [BR:cme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CYME_CMK235C
   NER (nucleotide excision repair)
    Other NER factors
     CYME_CMK235C
   MMR (mismatch excision repair)
    Other MMR factors
     CYME_CMK235C
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 16994251
NCBI-ProteinID: XP_005536624
UniProt: M1VHX2
LinkDB
Position
11:640263..643349
AA seq 1028 aa
MTCNWQLAHVLWRQEHLRSMKVICTVAKKELSATFKRPSNGYELSFALPRPRPPQKHCGP
TARRTAAAASRREVSCPTTPSRCRWSVRTHNLSAWNARTGTDLSGAAVVPSLQAASQPAL
VSARLARCAPATCNAGHGISSRRERRRVSDFFGYIPLGSFEGPGRLLTIFESAEVSLVKE
MPPLHRKQSRRVVCVADTSSDDSSSSAMASEASKFPGPDKFQNAALTRTSENELDANQPG
TGTLDSVEETPVYGAPTTDASSDGLSPRTPRKPSGTSSSLDREEGDAGGSELFGTGRLRP
TASEQVAEVKSDVSPADADSNHRLASTLQTAQLGSSEAKPPKKRARKGERAKRTLSTKAN
GDSDDEDRQTGLYGALAADDYLKLFEPCWEPGQPVPYSFLANAFETMAGTSGRIDLTRQL
ACVLFHVLNRTPVDLLPTIYLVINRLAPAHEGLEIGVGDALLLQALADATGRSLSKLRED
YHRTGDLGDVAVHSRTTQRTMFAVPRLTIRNVYNELLAIARASGKAMQEEKRRRIQKLLV
AAKNNEAKFIARALQGRLRIRLAEKTVILALAAAFVQNAAASRGTHPDAARVERAAHLLR
TSSNECPSWNMITEALLELQDIDERLLERCHLTPGLPVMPMLAKPSRSIAEVLTRFEGMR
FTCEYKYDGERAQIHGLADGSIRIYSRNAEDHTRKYPDVMEQILQAVGSSSDQPSFILDS
EVVAFDRDAQRILPFQYIQQRARKHVSLDDLKTNVLIVAFDILYWRGEPLTRKPLAERRA
ILRDAFQEVPGGFRFATRRDVSDLDGIQKFMEEAVRDSCEGLMVKALEGPLSTYEPANRT
QHWLKLKKDYLRTIGDTLDLVPIGAYYGRGKRTGWFGSFLLACYNPETEQFEAVTRVGTG
FSEEQMAQLHSEYAQYVLDSPRPYVACSESVKPDIWLDPRQVWEVQCADLSISPAYVAAC
GYIAPDKGISVRFPRLLRIRSDKRPEDATTSAQLAEMYRNQFRSTESSSESSSSAAPSDE
EPERNADD
NT seq 3087 nt   +upstreamnt  +downstreamnt
atgacctgcaattggcagctagctcacgtactctggcgtcaagagcatcttcgttccatg
aaggttatctgcactgtcgcaaaaaaagaattatctgccacattcaagcgaccttcgaac
gggtacgagctgtcgttcgcgctacccaggccccgtccgccgcaaaagcactgcgggccc
acagctcgtcgaactgcagctgctgcttcgcggcgtgaagtctcctgtccaactaccccg
agccgatgccgttggagcgtgcggacacacaacctgtccgcctggaacgcccgaacagga
actgacctcagcggggcggcggtggtgccttcgctgcaggccgcctctcaaccagcattg
gtgtcggcgcggttggcgcgctgcgcacctgcaacttgcaacgccgggcacggcataagc
agccgcagagaacgacgccgagtgagtgatttcttcggctacatcccgttgggaagtttc
gagggacccgggaggctgttaacaatcttcgagagtgcggaagtgagcttagtgaaggag
atgccccctctgcaccgaaagcagtcccgtcgcgttgtatgtgttgcggacacgagcagt
gatgacagttcgtcatcggcaatggcttcagaagcctcaaagttccctggccccgataag
tttcaaaacgcagcgcttacacgcacatccgagaatgagttggacgcaaatcagcctgga
actggcacgctcgacagtgttgaagaaactccagtctacggagcgccaaccacggacgct
tcgagcgacggtttatctccaagaacgcctaggaaaccttcgggtacatcttcatcgttg
gatcgggaagagggagacgctggtggctccgagttgttcggaaccggacgattgcgacca
acagcctcggaacaggtagcggaggtcaagagcgatgtctcgccggcggacgcggacagc
aaccaccggctcgcatcaacgctccagaccgctcagcttggttcaagcgaagcgaagccg
cccaagaaacgagcccgcaaaggagagcgcgccaaacgcacgctcagcaccaaggcgaac
ggcgactcggatgacgaggatcgacagacaggactatacggtgccctggcggcagacgat
tacctgaagctgtttgagccctgttgggagcccggccaacccgtcccatatagttttctt
gcgaatgcgtttgaaacaatggcgggaacaagcggacgcatcgacctgacccgccaactt
gcctgtgttctgttccatgtactgaatcgaacgccggtggatctattgccgaccatttac
ctagtcattaaccggctagcaccagcgcatgaaggtcttgaaatcggcgttggagacgct
ctgttgttgcaagcgcttgccgatgccacagggcggagtctcagcaaactcagagaagac
tatcaccggacaggcgacctgggagatgtcgccgtccattcgcgaacgacgcagcgcacc
atgttcgccgtgcctcgcctgacgattcgcaatgtctacaatgagttgctggccattgca
cgcgcttccggtaaggcaatgcaggaagaaaaacgtcgccgtattcagaagctcctcgtc
gctgcaaagaataatgaagcgaagtttattgccagggcactacaaggaagattgcgtatt
cggcttgcggagaaaaccgttattctggcacttgcggccgcatttgtacagaatgcggca
gcgagtcgtggtacgcacccggatgcggcacgcgtcgaacgggctgcgcacctactgcga
acatcatccaatgaatgcccgtcatggaatatgattactgaggcattgctcgagttgcaa
gatatcgatgagcggcttctcgagcgatgtcatttgacaccaggcctcccagtgatgccc
atgcttgccaaacccagtaggtctatagcggaagtcctcactcggttcgaagggatgcgc
tttacctgcgaatacaagtatgatggcgagcgagcccagatccacggcctcgcagatgga
tccatccgcatatactcacggaatgctgaagatcatacgcgcaaatatccggacgtcatg
gagcagatactacaggcggttggctcgtcatccgatcagccttcttttattctggattcg
gaggtggtagcctttgatcgagacgcccaacgcattctacctttccagtacattcagcag
cgcgcgcgcaaacacgtctcgctggacgacctcaaaacgaacgttctcatcgtggcgttc
gatatcctatactggagaggagagcccctgactcgcaagccattggcagaacggcgagcg
atcctgcgggatgcctttcaagaggtgccgggtggttttcgctttgcgacgcgacgcgat
gtaagcgacctggacggtattcaaaagttcatggaggaggctgtgcgtgattcgtgtgag
ggcctcatggtgaaagcgcttgaaggtcctctttcgacttatgaaccggcgaatagaaca
cagcactggctcaagctcaagaaggactacctccggacaatcggcgatacactggatctg
gttccgattggtgcgtattacggtcgcggcaagcgaaccggctggttcggctcgtttttg
ctcgcctgctataatccagagacggaacagttcgaggcagtaacacgagtcggcacgggc
ttttcggaagagcagatggcccagctccactcggagtatgcgcagtacgtgctggatagc
ccacggccgtatgtggcctgcagcgagtccgtgaaaccggacatttggttggatccccgc
caggtttgggaggttcagtgcgctgatttgagcatctcgcccgcttacgtggcagcctgt
gggtacattgccccagacaagggcatctcggttcgctttcctcgtctgctacgaatccgg
agcgataagcggccggaggatgctacgaccagtgcacagctcgctgaaatgtatcggaat
cagttccggtctacggagagctcgtctgaatcttcatcatctgcagcgcctagcgatgaa
gagccagaaagaaacgcggatgactag

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