Cyanidioschyzon merolae: CYME_CMT290C
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Entry
CYME_CMT290C CDS
T00175
Name
(RefSeq) similar to TFIIH subunit SSL1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03022
Basal transcription factors
cme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CYME_CMT290C
09124 Replication and repair
03420 Nucleotide excision repair
CYME_CMT290C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cme03021
]
CYME_CMT290C
03400 DNA repair and recombination proteins [BR:
cme03400
]
CYME_CMT290C
Transcription machinery [BR:
cme03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CYME_CMT290C
DNA repair and recombination proteins [BR:
cme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CYME_CMT290C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
NinF
Motif
Other DBs
NCBI-GeneID:
16997997
NCBI-ProteinID:
XP_005539299
UniProt:
M1VMJ1
LinkDB
All DBs
Position
20:738776..740425
Genome browser
AA seq
549 aa
AA seq
DB search
MTQLCVERSGSCRLHLQRPVQQSALSGRPEGVRLECTSASFIVNAPMHLPFTQLEEPARD
ASERLQWDARAAGLQPREQVAPTSRREDEANYAWERRYERSWEAIGVSDAGGGIFRRDAL
DQQRQRHRDLERVLQDSAASAARRRVGRALGLIRFLVLALDLSAAVRSRSRSSLSSSSQD
LKPSRWSAILSGAQYFVQDFFSENAVSQLAIVILQDGIAAQVSEMSGSVRLHIDALRSLQ
RGTNKFLHDGDGGQTSLQNCLELGLRIHASVPRFGTREMLIVYGGLSTCDPGDIHKTIQN
CVDASIRVSVIGLGAEVYILRATAERTQGTYRVPMDNDHFHQLLRQQVPPPPPPPQASRS
TKHLEPSEAPWTAMQMVMGFPPKLARDRVVVAIDTRKACRLGFECPRCRQWLSEVPGNCI
LCGLTLTSVLHLARSYHHIFPAPRFEEREEPSSSRASALMSDEEGFSVSPSSVPERMPDA
AAPPVKWQCSGCSRTLSTKDDLQLQCTGICRQLFCIDCDQLVHERLHTCPACLAMSLNMR
QRSIPRTIT
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagctgtgcgtcgagcgttccgggtcatgccgcttgcatctgcagcgccctgtt
cagcagagtgcactcagcggcaggcctgagggcgttagactcgaatgcacttctgcgtct
ttcatcgtcaatgcaccgatgcacctgccatttacacagttagaagaacctgcacgagac
gcaagcgagcgattacagtgggacgccagggcggctggtctccagccacgtgaacaagtt
gcacccacatcgcggcgagaagacgaagcgaactatgcctgggagcgacgctatgaacgt
agctgggaggccataggtgtcagcgatgctggcgggggtatcttccgtcgagatgctctt
gatcaacagcgccaacggcaccgtgacttggaacgtgttttgcaggacagcgctgcttcc
gctgcacgtcgccgcgttggtcgtgcgctaggcctcattcgctttctggtgctggcgctg
gacctctccgctgcggtgcgctcgcgctcgcgatccagcttaagtagtagtagccaagac
ctgaaaccttcccgctggtcggcaattctgtcgggcgctcagtattttgttcaggacttt
ttcagcgagaacgccgtatcccagctggcgattgttatcctccaggacggcattgccgcg
caggtaagcgagatgtcgggttctgtgcgtctgcatattgatgcgctgcgcagtcttcag
cgaggcacaaacaaatttctccacgacggagacggcggccagacctctctccagaactgt
ctagagctggggctccggattcatgcatctgtcccgagattcggcaccagagagatgctg
attgtctacggagggttatccacatgtgatccaggtgatatacataagactatccagaac
tgtgtcgacgcaagtattcgggtgagcgtgatcggcttaggtgccgaagtttacatcttg
cgggctacagcggagcgaacacagggcacctatcgtgtacccatggataatgatcacttc
catcagctgctgcgacaacaggtgccaccaccgccaccaccgcctcaggcttcacgttcc
acgaaacacctggaaccatccgaggcaccgtggacggccatgcagatggtcatgggcttc
cccccgaaactcgctagagatcgcgtagttgtcgccatcgatacacgaaaggcgtgccgc
ctcggattcgaatgcccacgatgccggcaatggctgtccgaagtccccggtaactgcatc
ctttgcgggctcacgcttaccagcgtactccacctggctcgctcgtatcatcacatcttt
ccagcaccgcgtttcgaggagcgtgaagagccttcctcttcgcgtgcgagcgcgctcatg
agcgatgaggaaggtttcagcgtatctccatcttcggtgcctgagcgtatgccggatgcg
gccgcaccacccgtgaaatggcaatgcagcggctgttcccgcactttatcgacaaaggat
gatctgcagctgcagtgcactggtatatgtcgacagcttttttgcattgactgcgatcag
ctcgtccacgagcgattgcatacgtgcccggcctgtctggcgatgagcctgaatatgcgg
cagcgcagcatcccgcgaacgatcacctga
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