KEGG   Chenggangzhangella methanolivorans: K6K41_14820
Entry
K6K41_14820       CDS       T07462                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cmet  Chenggangzhangella methanolivorans
Pathway
cmet03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cmet00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    K6K41_14820 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cmet03400]
    K6K41_14820 (ligD)
Enzymes [BR:cmet01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     K6K41_14820 (ligD)
DNA repair and recombination proteins [BR:cmet03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     K6K41_14820 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QZN98379
UniProt: A0A9E6R6V1
LinkDB
Position
2977215..2979665
AA seq 816 aa
MARASALDSYRAKRRFDATPEPSGDAETEAGWRYAIQKHDATRLHYDLRLELDGVLLSWA
VTRGPSRDTSEKRLAVRTEDHPVDYATFEGVIPEGYGAGTVMLWDHGSWEPVGDPRQGLK
DGKLAFHIHGERLVGRWALVRMKPRKDESRENWLLIKEKDEHVSRRGDVLKTHVKSVASG
RTMNQIAKGAAPAERSARKSGAPGFVEPMLATLVETTPDGDDWLFEVKFDGYRAQVAAAG
DEVAIYTRSGLDWTSRFPAIAEAARKLKLDGCLIDGEIVALDENGVSDFGALQGALEDGR
SRSLSLFAFDLLFDGGEDIRRLPLTERKARLKQRLRFSKGPVHYADDFEDGAGGLEALSK
AGYEGVVAKRRSGTYRSGRGKGWLKIKAGHRQEFAILGVSPSEKDRPFASLLVGLTEGRR
LVYAGRVGSGFSDADFERLTKAFSPRWREAPPIKPPPGAIGRNARWLEPDLVAEVAFAGF
TRDGQVRHGRFLGLREDKPARAAKRERAAAAKAASGSSKRSEAAPAPHVRLTHPERELYP
GVTKADVAAYLETVAPRMLPFAEGRALSLVRCPEGIAGERFFQKHSHSGLPEAVGRRMIE
DGKGEPFEALFVADAEGLASTAQVSALEIHINGARLDRPDKPDRVVFDLDPDETVGFAEV
KEAAFELREALLALELESFALLTGGKGVHVVAPLARKRGWDEVSAFAKALAERFAEAEPK
RFVATMTKAKRRGKIFIDHFRNGRAASAIAPYSLRARDGAPVACPVTWEELRRLDRADAF
QITDAERIAAADPWKGYATAAKQSISARALKALVGD
NT seq 2451 nt   +upstreamnt  +downstreamnt
atggcgcgcgcctccgcgctcgactcgtaccgagccaagcgccgcttcgacgcgacgccg
gagccgagcggcgacgccgagaccgaggcgggatggcgctacgccatccagaagcacgac
gccacgcgtctccattacgatcttcggctcgagcttgacggggtgctgctgagctgggcc
gtgacgcgcggcccgagccgcgacacgtccgaaaagcgcctcgcggtgcgcaccgaggat
cacccggtcgactacgcgacgttcgagggcgtcattccggaagggtacggcgccgggacg
gtgatgctctgggaccatggctcgtgggagccggtgggcgatccgcgccaggggctgaag
gacggcaagctcgctttccatatccacggcgagcggttggtcggtcgttgggcgctcgtg
cggatgaagcccagaaaggacgagagccgcgagaactggcttctgatcaaggagaaggac
gagcacgtctcccgccgcggcgacgtgttgaagacgcatgtgaaaagcgtcgcgagcggc
cgcacgatgaaccagatcgccaagggcgcggcgcccgcggagcgctccgcgcggaagtca
ggcgcgccgggtttcgtcgagccgatgctggcgacgctggtcgagacgacgccggacggc
gacgactggctgttcgaggtgaagttcgacggctaccgcgcgcaagtcgccgccgcgggc
gacgaggtcgcgatctacacccgcagcggtctcgactggacctcccgctttcccgcgatc
gccgaggcggccaggaagctcaagctcgacggctgcctgatcgacggcgagatcgtcgcg
ctcgacgagaacggcgtcagcgacttcggggcgctccaaggcgcgctcgaagacggccgc
tcgcggtccctgagcctcttcgccttcgacctgctgttcgacggcggcgaggacatccgc
cggttgccgctgaccgagcgcaaggcgcggctgaagcagcggctgcgcttctcgaagggc
cctgtccattacgccgacgacttcgaggacggcgcaggcggcctcgaggcgctgtcaaaa
gccggctacgagggcgtggtggccaagcgccggtccgggacgtaccggtcgggccggggc
aagggctggctgaagatcaaggccggccatcgccaggagttcgcgatcctcggggtgtct
ccgtcggaaaaggaccggcccttcgcctcgctgctggtcgggctgacggagggacgacgc
ctcgtctacgccggccgggtcggctcggggttctccgacgccgatttcgaacggttgacg
aaggctttttcgccgcgttggcgcgaggctcccccgatcaagccgccgcctggcgcgatc
ggccgtaacgcgcgctggctcgagcccgatctcgtcgccgaagtcgccttcgcgggcttc
acccgcgacggacaggtgcgccacgggcgtttcctcggacttcgggaggacaagccggcg
cgcgcggcgaaaagggagcgggccgcggccgccaaggccgcttcggggtcgtcgaagcgc
agcgaggcggcgcctgccccgcatgtgcgcctcacccatcccgaacgggagctctatccg
ggcgtcacgaaggcggacgtcgcggcctatctggagacggtcgcgcccaggatgctgccc
ttcgcggagggcagggcgctcagcctggtgcgctgtccggaagggatcgcgggcgagcgc
ttcttccagaagcactcgcattcggggctcccggaagccgtcggccgccgaatgatcgag
gacggcaagggcgagcccttcgaggcgctcttcgtcgccgacgccgaggggctggcgtcg
accgctcaggtctccgcgctcgaaatccacatcaacggcgcgcggcttgatcgtcccgac
aagcccgaccgtgtggtgttcgacctcgatccggacgagacggtcggctttgcggaggtg
aaggaggcggcgttcgagctgcgggaggcgcttctcgcgctggagctggaaagcttcgcg
ctgctcaccggcggcaagggcgtgcacgtcgtcgcgccgctcgcccgcaagcgcggctgg
gacgaggtctcggccttcgccaaggcgctcgccgaacgcttcgcggaggccgagccgaag
cgcttcgtcgcgacgatgaccaaggccaagcgccgcgggaagatcttcatcgaccacttt
cgcaacggccgagccgcgagcgcgatcgcgccctacagcctgagggcgcgcgacggcgcg
ccggtcgcctgtccggtcacgtgggaggagctgcggcgcctcgaccgcgccgacgccttc
cagatcacggacgcggaaaggatcgcggccgccgacccgtggaagggctatgcgaccgcc
gccaagcagtcgatctcggcgcgggcgctgaaggcgctcgtgggcgactga

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