Chenggangzhangella methanolivorans: K6K41_14820
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Entry
K6K41_14820 CDS
T07462
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cmet
Chenggangzhangella methanolivorans
Pathway
cmet03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cmet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K6K41_14820 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmet03400
]
K6K41_14820 (ligD)
Enzymes [BR:
cmet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K6K41_14820 (ligD)
DNA repair and recombination proteins [BR:
cmet03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K6K41_14820 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QZN98379
UniProt:
A0A9E6R6V1
LinkDB
All DBs
Position
2977215..2979665
Genome browser
AA seq
816 aa
AA seq
DB search
MARASALDSYRAKRRFDATPEPSGDAETEAGWRYAIQKHDATRLHYDLRLELDGVLLSWA
VTRGPSRDTSEKRLAVRTEDHPVDYATFEGVIPEGYGAGTVMLWDHGSWEPVGDPRQGLK
DGKLAFHIHGERLVGRWALVRMKPRKDESRENWLLIKEKDEHVSRRGDVLKTHVKSVASG
RTMNQIAKGAAPAERSARKSGAPGFVEPMLATLVETTPDGDDWLFEVKFDGYRAQVAAAG
DEVAIYTRSGLDWTSRFPAIAEAARKLKLDGCLIDGEIVALDENGVSDFGALQGALEDGR
SRSLSLFAFDLLFDGGEDIRRLPLTERKARLKQRLRFSKGPVHYADDFEDGAGGLEALSK
AGYEGVVAKRRSGTYRSGRGKGWLKIKAGHRQEFAILGVSPSEKDRPFASLLVGLTEGRR
LVYAGRVGSGFSDADFERLTKAFSPRWREAPPIKPPPGAIGRNARWLEPDLVAEVAFAGF
TRDGQVRHGRFLGLREDKPARAAKRERAAAAKAASGSSKRSEAAPAPHVRLTHPERELYP
GVTKADVAAYLETVAPRMLPFAEGRALSLVRCPEGIAGERFFQKHSHSGLPEAVGRRMIE
DGKGEPFEALFVADAEGLASTAQVSALEIHINGARLDRPDKPDRVVFDLDPDETVGFAEV
KEAAFELREALLALELESFALLTGGKGVHVVAPLARKRGWDEVSAFAKALAERFAEAEPK
RFVATMTKAKRRGKIFIDHFRNGRAASAIAPYSLRARDGAPVACPVTWEELRRLDRADAF
QITDAERIAAADPWKGYATAAKQSISARALKALVGD
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgcctccgcgctcgactcgtaccgagccaagcgccgcttcgacgcgacgccg
gagccgagcggcgacgccgagaccgaggcgggatggcgctacgccatccagaagcacgac
gccacgcgtctccattacgatcttcggctcgagcttgacggggtgctgctgagctgggcc
gtgacgcgcggcccgagccgcgacacgtccgaaaagcgcctcgcggtgcgcaccgaggat
cacccggtcgactacgcgacgttcgagggcgtcattccggaagggtacggcgccgggacg
gtgatgctctgggaccatggctcgtgggagccggtgggcgatccgcgccaggggctgaag
gacggcaagctcgctttccatatccacggcgagcggttggtcggtcgttgggcgctcgtg
cggatgaagcccagaaaggacgagagccgcgagaactggcttctgatcaaggagaaggac
gagcacgtctcccgccgcggcgacgtgttgaagacgcatgtgaaaagcgtcgcgagcggc
cgcacgatgaaccagatcgccaagggcgcggcgcccgcggagcgctccgcgcggaagtca
ggcgcgccgggtttcgtcgagccgatgctggcgacgctggtcgagacgacgccggacggc
gacgactggctgttcgaggtgaagttcgacggctaccgcgcgcaagtcgccgccgcgggc
gacgaggtcgcgatctacacccgcagcggtctcgactggacctcccgctttcccgcgatc
gccgaggcggccaggaagctcaagctcgacggctgcctgatcgacggcgagatcgtcgcg
ctcgacgagaacggcgtcagcgacttcggggcgctccaaggcgcgctcgaagacggccgc
tcgcggtccctgagcctcttcgccttcgacctgctgttcgacggcggcgaggacatccgc
cggttgccgctgaccgagcgcaaggcgcggctgaagcagcggctgcgcttctcgaagggc
cctgtccattacgccgacgacttcgaggacggcgcaggcggcctcgaggcgctgtcaaaa
gccggctacgagggcgtggtggccaagcgccggtccgggacgtaccggtcgggccggggc
aagggctggctgaagatcaaggccggccatcgccaggagttcgcgatcctcggggtgtct
ccgtcggaaaaggaccggcccttcgcctcgctgctggtcgggctgacggagggacgacgc
ctcgtctacgccggccgggtcggctcggggttctccgacgccgatttcgaacggttgacg
aaggctttttcgccgcgttggcgcgaggctcccccgatcaagccgccgcctggcgcgatc
ggccgtaacgcgcgctggctcgagcccgatctcgtcgccgaagtcgccttcgcgggcttc
acccgcgacggacaggtgcgccacgggcgtttcctcggacttcgggaggacaagccggcg
cgcgcggcgaaaagggagcgggccgcggccgccaaggccgcttcggggtcgtcgaagcgc
agcgaggcggcgcctgccccgcatgtgcgcctcacccatcccgaacgggagctctatccg
ggcgtcacgaaggcggacgtcgcggcctatctggagacggtcgcgcccaggatgctgccc
ttcgcggagggcagggcgctcagcctggtgcgctgtccggaagggatcgcgggcgagcgc
ttcttccagaagcactcgcattcggggctcccggaagccgtcggccgccgaatgatcgag
gacggcaagggcgagcccttcgaggcgctcttcgtcgccgacgccgaggggctggcgtcg
accgctcaggtctccgcgctcgaaatccacatcaacggcgcgcggcttgatcgtcccgac
aagcccgaccgtgtggtgttcgacctcgatccggacgagacggtcggctttgcggaggtg
aaggaggcggcgttcgagctgcgggaggcgcttctcgcgctggagctggaaagcttcgcg
ctgctcaccggcggcaagggcgtgcacgtcgtcgcgccgctcgcccgcaagcgcggctgg
gacgaggtctcggccttcgccaaggcgctcgccgaacgcttcgcggaggccgagccgaag
cgcttcgtcgcgacgatgaccaaggccaagcgccgcgggaagatcttcatcgaccacttt
cgcaacggccgagccgcgagcgcgatcgcgccctacagcctgagggcgcgcgacggcgcg
ccggtcgcctgtccggtcacgtgggaggagctgcggcgcctcgaccgcgccgacgccttc
cagatcacggacgcggaaaggatcgcggccgccgacccgtggaagggctatgcgaccgcc
gccaagcagtcgatctcggcgcgggcgctgaaggcgctcgtgggcgactga
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