Caldinitratiruptor microaerophilus: caldi_10620
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Entry
caldi_10620 CDS
T08566
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cmic
Caldinitratiruptor microaerophilus
Pathway
cmic03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cmic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
caldi_10620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmic03400
]
caldi_10620
Enzymes [BR:
cmic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
caldi_10620
DNA repair and recombination proteins [BR:
cmic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
caldi_10620
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BDG59972
UniProt:
A0AA35CIW5
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All DBs
Position
1074550..1075563
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AA seq
337 aa
AA seq
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MPAGGQPTVVRVAGREVRVTNPDKRLWPVDGLTKWDLVDYYVRVSPFLLPHLRGRPLVLT
RYPDGIDGEWFYSKNAPEGAPEWLRTWTYHHESGPNHYIVAEEAAALAYVANLAAIELHP
WLSSCDTPEEPDFAVVDLDPAEGATWEDVRQVALLVREILRAVGVEGFPKLSGATGLHVY
CPCAPGHSFRDTAEFVRAIGRLLLRIDPERVTLERVVARRAGKVYVDYLQNRLGQTITAV
YGLRPRPGAPVSIPVTWDELRTGDVPEVNLRTVWERLRRVGDLFAPVLDRRQDLRPATAA
LQAEAGTQRPAPAHEPGSGEASNWQHLSEDVPPLGAI
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
ttgcctgccggaggacagcccacggtggtacgggtggccggacgcgaggtccgagtgaca
aacccggacaagcggctctggcccgtggacgggctcaccaagtgggacctcgtcgactac
tacgtgcgggtgagccccttcctgctgccgcacctccggggccggcccctggtgctcacc
cgctacccggacgggatcgacggggagtggttctacagcaagaacgcgcccgagggcgcg
ccggagtggctgcggacgtggacctaccaccacgagtcggggccgaaccactacatcgtg
gccgaggaggccgcggcgctcgcctacgtggccaacctggcggccatcgagttgcacccg
tggctcagctcgtgcgacacgcccgaggagcccgacttcgccgtggtcgacctcgacccc
gccgaaggcgccacctgggaggacgtccggcaggtggcgctgctcgtccgggagatcctc
cgcgccgtgggggtggagggctttccgaagctgtccggcgccaccggcctccacgtctac
tgcccgtgcgcgcccggccactccttccgggacaccgccgagttcgtgcgggcgatcggc
cggctcctcctccggatcgacccggagcgggtgaccctggaacgggtggtcgcccggcgg
gcggggaaggtgtacgtggactacctgcagaaccgcctcggccagaccatcacggccgtc
tacggcctgcggccccgcccgggggcgcccgtgtcgatccccgtgacctgggacgagctt
cgcaccggcgacgtgcccgaggtgaacctgcgaaccgtgtgggagcggctgcggcgggtg
ggcgacctcttcgctcccgtcctcgaccggcggcaggatctccgccccgccaccgcggcc
ttgcaggcggaagccggtacccagcgccccgcgccagcgcatgagccaggatctggagag
gcaagcaactggcaacatctgagtgaggacgtcccaccgttgggagcgatataa
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