Christensenella minuta: B1H56_06825
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Entry
B1H56_06825 CDS
T05665
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cmiu
Christensenella minuta
Pathway
cmiu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B1H56_06825 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmiu03400
]
B1H56_06825 (mfd)
Enzymes [BR:
cmiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B1H56_06825 (mfd)
DNA repair and recombination proteins [BR:
cmiu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B1H56_06825 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
DUF1474
AAA_22
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AYH40219
UniProt:
A0A136Q8C1
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All DBs
Position
complement(1442525..1445923)
Genome browser
AA seq
1132 aa
AA seq
DB search
MNDAVSPLIAKSGAFQDVLKCIRGGQLPCSVFGVTPHAKPYFAEAAARGSGRQVLCVTNT
EQAAREYAAAAGVLFPENDYSIRAAQAKGREEELVRVKVMKNAGIIKKPVFLSIRAFLGK
LVPKEKFDGTCLLIEAGKSYDGEFLMQELARNGYERVGTVYSRGEFARRGEILDIYPPDS
KMPLRVTFFDDEVESIRTFDSETQRSAGKPMEEYRLPPAREVVLGEEEKEKLSAYLGKQE
NKRLADSIMADVEEYGSFENADTFLPVMFTPAYIADYFPDAILMFDDFERIYGEAKRILT
EFADIAAHLVAEGEAFPIQGESMGELRALIQNKTADVIDMAGTKNARLKTVSEVDMDMHG
AVEYRGRIDQLVRDLLDRREHGYSVRMFAGGKAQALSSALAELDVIAPVEKAMSAPLSVS
GDYVSYGFEIPSGKLLVLGANDIYGRVKKAPVKKQRQHAEEDIFSDLSPGDFVVHDVHGK
GKYLGLKTLEAGGTVAEYMEIEYRGGDKLYIPTAQIDRVQKYIGSEDAPPQLSKLGGREW
EAAKTKARESALKLAFDLVDLYAQRFESKGHAFPEDTVWQNQFEDSFEYEETEGQLQSIE
EIKKDMESPRVMDRLLLGDVGYGKTEVAMRAAMKAVTDGKQVAVLVPTTLLARQHLKTFR
ERFRDFPVTIAGLTRFSKGRHKQVLEDLRRGKIDIIIGTHRLLSNDVKFNDLGLLIVDEE
QRFGVTHKEKIKLLKQSVDVLTLSATPIPRTLEMSLVGIRDMSTLDTPPSMRKQPYSYVM
RYSDGLLRDAVMREIDRGGQAYFVCRRINEMDQLVADVKRNVPEARVAAAHGQMSEAELE
RVVGGFIDGEYDVLVCTTIIESGIDIPSVNTIIVYEADKFGLSQLYQLKGRVGRSDKNAY
AYFTYLGDGSMKENAAKRMAAIREFTQLGSGFKIAMRDLQIRGAGNLLGPEQSGHMATVG
YAMYCKLMREAVMTAKGRHVEADFETAVELGVPAYIPDSYISNQTDKMDIYKLISKIKTV
ADAKSAAKEIADRYGKIPKEVNNLIVTAAVKSYAAAAGIASVIKKADGIELKYSETVNPN
VKKLLKMVSGRANDVILRPSTPPVLVYRTERGFDTNAFLEFLGGIKLRRRKS
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
ttgaatgacgcggtaagtccgctgatcgcaaaaagcggcgcgttccaggatgtactgaaa
tgtatccggggagggcaattgccctgctcggtttttggcgtcaccccgcatgcgaagcct
tattttgcggaagccgccgcaaggggctcggggcggcaggtattgtgcgtcacaaatacg
gagcaggcggcgcgtgaatacgcggcggcggcgggcgtgctcttcccggaaaacgattat
tctatccgcgcggcacaggccaaggggcgcgaagaagagcttgtgcgcgtaaaggtcatg
aaaaatgccggaataataaaaaagccagtgttcctttcgattcgcgccttcctcgggaaa
cttgttcccaaagaaaaatttgacgggacctgcctgctgattgaggcgggcaagagctat
gacggcgagttcctgatgcaggagctcgcgagaaacggatatgaacgcgtgggcaccgta
tattcgcgcggcgaatttgcgcggcgcggggaaatactcgacatttatccgccggattca
aaaatgcccctgcgcgttacgttttttgatgatgaggtggagagcatccgtacctttgac
agtgaaacacagcggtcggcgggaaaaccgatggaggaataccgactgcccccggcgcgc
gaggttgtcctcggcgaagaggaaaaggaaaaactgtctgcctatctcggaaaacaggaa
aacaaaaggcttgcggacagcatcatggcggatgtggaggaatacggcagctttgagaat
gccgataccttcctgccggtgatgtttacccccgcgtatatcgcggattattttccggat
gcgatcctgatgttcgacgactttgaacggatatacggcgaggccaaacgcatcctgacg
gagtttgcagacatagcggcccaccttgtggcggagggcgaggcctttcccatacagggc
gaaagcatgggcgaactgcgggcgctcattcagaataaaacagcggatgtcattgatatg
gcggggaccaaaaatgcgcggcttaagacggtgagcgaggtcgatatggatatgcacggg
gcggtggaataccgcggccgtatagaccaacttgtgagagacctcctggaccggagggaa
cacggatattccgtgcgcatgttcgcgggaggcaaggcgcaggcgctttcttccgccctc
gcggagctggatgtgatcgcgcctgtggaaaaagcgatgtctgcgccgctttctgtcagc
ggggattatgtttcctatgggttcgagattccttcgggaaaacttcttgtgctgggtgcg
aatgatatctatggccgcgtgaaaaaagcgcccgtcaaaaagcagcgccagcacgcggag
gaggatattttcagcgacctttccccgggagactttgtggtgcatgacgtgcacggcaag
ggtaaataccttggacttaaaacgctagaggcgggcgggacggtcgcggaatatatggag
attgaataccgcgggggagacaagctttatatcccgaccgcgcagatcgaccgcgtacag
aaatatatcggcagcgaggacgcgccgccccagctttccaagctcggcggacgcgagtgg
gaggccgccaaaacaaaggcgcgcgaatcggccctgaagcttgccttcgatcttgtggac
ctgtatgcacagcggtttgaaagcaagggacacgccttcccggaggacacggtttggcaa
aatcagttcgaggattcctttgaatatgaggagacggaaggacagctccagagtatcgag
gagatcaaaaaagatatggaatccccgcgcgttatggaccggctgctcctcggcgacgtg
ggatacggcaaaacggaggtcgccatgcgcgcggctatgaaggctgtaacggacggcaaa
caggtggcggtacttgtgccgacgacgctgcttgcccggcagcacctgaagacctttcgc
gaacggttccgcgatttccccgtgaccatcgcgggcctgacccgtttttccaaaggacgg
cacaagcaggtgctcgaagacctgaggcgggggaagatcgatattattatcggcacccac
cggctgctttccaatgatgtgaaattcaatgatctgggacttctgatcgtggatgaagag
cagcgctttggcgtaacgcacaaagagaagattaagcttttaaagcaaagcgtagacgtg
ttgaccctttcggcaacgccgatcccgcgtacgctcgaaatgtctttggtcggtatccgc
gatatgagcacgctcgatacgcctccttccatgcgcaagcagccgtattcctacgtgatg
cgctattcggacggtctgctgcgcgacgcagtcatgcgcgagatcgaccggggcgggcag
gcctacttcgtgtgccgcaggatcaacgaaatggatcaacttgtggccgacgtgaaacga
aacgtacccgaagcccgggtcgcggcggcgcatggccagatgagcgaagccgagctggaa
cgcgtggtcggcgggtttattgacggggaatatgacgtgctcgtatgcacgacgatcatt
gagagcggcatcgacatcccgagcgtgaatacgatcatcgtatatgaagctgataaattc
ggcctttcccagctttaccagttgaaagggagggtgggccgttcggataaaaacgcctat
gcgtattttacctacctcggcgacggcagtatgaaggaaaacgcggcaaagcgtatggcg
gcgatccgcgagtttacgcagcttggcagcggttttaagatcgccatgagagacctgcag
atccgcggcgcaggaaacctgctcgggccggagcagagcgggcatatggctaccgtagga
tatgcgatgtattgcaaactgatgcgcgaagcggttatgacggcaaaaggcaggcatgtg
gaagcggattttgaaaccgcggtggaactcggcgtgccggcctatatcccggacagctat
atcagcaaccagacggacaaaatggatatttacaagctgatctccaagatcaaaacggtg
gcggatgcgaaatctgcggcaaaggagatcgccgaccgctatggaaaaattccgaaagag
gtcaataacctgatcgttacggcggcggtgaaaagctatgcggccgccgcgggaatcgcc
agcgtgattaagaaagcggacgggatcgagctcaagtattcggaaacggtaaacccgaat
gtaaagaaactgttaaaaatggtgagcggacgcgcaaatgatgttatactgagaccgtcg
actccgccggtgcttgtctacaggacggagcggggattcgacacgaacgcttttctggaa
tttctgggtgggattaagctgcgccgccggaaaagctga
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