Callorhinchus milii (elephant shark): 103182058
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Entry
103182058 CDS
T03088
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03013
Nucleocytoplasmic transport
cmk03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103182058 (upf1)
03015 mRNA surveillance pathway
103182058 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmk03019
]
103182058 (upf1)
Enzymes [BR:
cmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103182058 (upf1)
5.6.2.5 RNA 5'-3' helicase
103182058 (upf1)
Messenger RNA biogenesis [BR:
cmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103182058 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
103182058 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
103182058
NCBI-ProteinID:
XP_042198683
LinkDB
All DBs
Position
Unknown
AA seq
1100 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQSQGPIEGQVNG
PEGVLQNGAVDDAVAKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVIIKCQLPKRFTAHGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHHTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGARFMTTAMYDAREAIIPGSVYDRSGQGRPSNMYFQTHDQIGMIGAGPSHIAAM
NIPIPFNLMMPPMPPPGYFGQANGPTAGRGLAKGKAGRGGRQRNRGMGNQQNNPSNLHNS
QASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggacgcgtacgggcccagctcgcagacgctgactttcctggacaccgaggag
gccgagctcctgggcgccgacacgcagggctcggagttcgagttcaccgacttcacgttg
ccgtcgcagacgcagacgcaaggccagagccaagggccgatcgagggacaggtaaatgga
cccgaaggtgtcctgcagaacggagcagtggatgatgcagtggctaaagcgagccaattg
ttagcggaattgaacttcgaagaggatgaggaagatacatactacaccaaggaccttcct
ctgcatgcgtgcagttactgtgggattcatgatccagcctgcgtggtttactgcaacacc
agcaagaaatggttctgtaatggccgtggaaacacttctggaagccatattgtgaaccac
ctggtgagagccaagtgcaaggaagtgactctgcacaaggatgggcccctgggggagacg
gtcttggagtgttacaactgcggctgcaggaatgtgttcctattgggcttcattcctgcc
aaagccgattctgtggtagttctgctgtgcagacaaccctgtgccagtcagagcagcctg
aaggacatcaactgggatagctcgcaatggcagccgctcattcaggaccgctgtttcttg
tcctggctggtgaaaattccctccgagcaggagcagctaagagcacgtcagatcacggca
caacagatcaacaagctggaggagctctggaaggataatccctcggccacgctcgaggac
ctggagaagccgggagtggatgaggagccacagcatgtgctcctgcgctacgaggatgcc
taccaatatcagaacatcttcgggccgttggtcaagctggaggccgactacgacaagaag
ctgaaggagtctcagactcaggacaacatcactgtcaggtgggaccttggtctgaacaag
aagagaattgcctacttcactctgcccaagacggactccgacatgcgcctgatgcaaggg
gatgagatctgtctgcgctacaagggcgacctggctcctctctggaagggaattggccac
gtgatcaaagtccccgacaactacggggatgagattgccattgaactgcgaagcagtgtt
ggggcaccagttgaggtgacccacaatttccaggtggactttgtctggaaatccacttcg
tttgacaggatgcagagcgcactgaagaccttcgctgtggatgagacctcggtctctggg
tacatttaccacaagctgctgggccacgaggtggaagatgtgatcatcaaatgccagctt
cccaaacgcttcacggctcatggtctgcctgacctcaatcactcacaggtttacgctgtg
aagactgttttgcagcgtcctctcagtctgattcagggcccgcccggcaccggcaaaaca
gttacctctgcgaccattgtgtatcacctcgccaggcagggcaatgggcctgtcctggtg
tgcgctccaagtaacatcgccgtggatcaactgacggagaagattcaccacacggggctg
aaagtggtcaggctgtgcgccaagagccgagaggccatcgattcaccagtctccttcctg
gcactgcacaaccagatccgcaacatggacagtatgcccgaactgcagaagctgcagcag
ctgaaggacgagaccggggagctgtcgtctgctgatgagaagcgttaccgtgcgctcaaa
aggacagccgagcgggagctgctgatgaacgctgacgtgatttgctgtacctgtgtgggt
gcaggcgacccgcgtttggctaagatgcagttccgctccattctgatcgacgagagtaca
caggctacggaacccgaatgcatggtgccagtggtgctgggagcgaaacagctcatcctt
gtgggtgaccattgccagctggggccagtggtcatgtgcaaaaaggccgccaaggctggt
ctgtctcagtcgctgtttgagcgcctggttgttctgggaatccggccgattcgcctgcag
gtccagtaccggatgcatccggcgctcagcgcctttccgtcaaatatcttttatgaggga
tcactgcaaaatggcgtcactgcggcggatcgtattaagaagggtttcgacttccaatgg
ccgcagcctgacaagccgatgttcttctatgtgactcagggccaggaggagattgccagc
tcaggaacttcctacctgaataggactgaggctgctaatgtggagaagatcaccaccaaa
ctgttgaaagctggcgcgaagccagatcagatcggcatcatcactccttacgaagggcag
cgatcctacctggtgcagtacatgcagttcagtgggtctctgcacactaagctctaccag
gaggtggagattgccagcgtggatgcattccagggccgagagaaagacttcatcatcctg
tcatgtgtgcgagccaacgaacatcaggggatcgggtttctcaatgaccctcgccggctg
aacgtcgccctgaccagagcgaggtacggtgtcatcattgtggggaacccgaaggcactg
tccaaacagcccctgtggaaccacctcctgaactattataaggagcagaaggtgctggtg
gaggggccactgaacaacctgcgcgagagtctgatgcagttcagcaaaccccggaaactg
gtcaacaccatcaatccgggtgcccggttcatgaccacggctatgtacgacgcacgggaa
gccatcatcccaggatctgtgtacgaccgaagcggacagggccgtccctccaacatgtat
ttccaaacccacgaccagattgggatgatcggagccggccccagccacatcgcagcgatg
aacatcccaatccctttcaatctgatgatgcccccaatgccacctccagggtactttggg
caggccaatgggccaacagcaggtcgcggcctggctaaagggaaagcaggtcgcggtggt
cgtcagcggaatcgaggcatgggcaaccagcagaacaacccgtccaacctccacaacagc
caggccagccaggatgtggtgtcccagcctttctctcagggccccctgacccagggctac
atctccatgagtcagccctcacagatgagccagccaggcctctctcagccggaactctcg
caggacagttacctgggcgacgagttcaagtctcagatagacgtggctctgtcacaggac
tcgacttaccagggggagcgtgcatatcaacatggcggagtgactgggctgtcacagtac
tag
DBGET
integrated database retrieval system
