Callorhinchus milii (elephant shark): 103189418
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Entry
103189418 CDS
T03088
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56 isoform X1
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
cmk
Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cmk04121
]
103189418
Enzymes [BR:
cmk01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103189418
Ubiquitin system [BR:
cmk04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
103189418
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-B_box
zf-C3HC4_3
zf-C3HC4
NHL
zf-RING_5
zf-RING_2
zf-C3HC4_2
zf-C3HC4_4
PI3K_P85_iSH2
UPF0242
Arfaptin
zf-ANAPC11
Exonuc_VII_L
Phage_Mu_Gam
FH2
DUF2959
Motif
Other DBs
NCBI-GeneID:
103189418
NCBI-ProteinID:
XP_007907996
UniProt:
V9KES2
LinkDB
All DBs
Position
Unknown
AA seq
678 aa
AA seq
DB search
MATCSSFAEIIENDFLNCNICLEKYRNPKYLPCHHTYCEECLRKLVPHKTKVFQCPECRQ
EVTLNEGGISNLKTNFFINSLLNILPLNETIGKMCSVCPSKGQHDRPAVTQCFDCPSFMC
QLCTDDHLSIPSQHQHKVLRLSDTSCDAEIHVRKKIYCAAHPKKEGGYFCRPCNASICDT
CLVNSHSRHEALSMSKAAESSTPAVRELVGKLSTKVQSLTRSQDDLNAALEKLKAAERSI
ESKMVDAVAQVQSALFKQRDDIRKKMSDFVKQQEALYETAKADLQRQTKSAESTRDYSER
VLRAGQNGSIVCLEKILGEQVRTLLAYQPPSMKEDIPKLVVTKDYMSQMDLFRIELGQEA
AMQKIPPVPDQAPEHWQEFARFSSPELPPVQSPYENVAGNWLRPARRCNFTTECYAECNS
KLTGVSMLNNGDIIVADEANGILKCYSIDGDFRRQIAIGDTGKDPCSVAVCGDLIACTAE
SKLYFLDYDGDRVRQLLLRGSESSYPITAYEDQYVVVSEGSMCSLSLYGLDGQVVDRVKP
QGYQGIRFLFVAVSSQENFIVSDIGKKCLVIFRRNEDVINICDEIWMQGVPRSLNPFGVC
VDSYDDIYVGEPGCIISFSPEGIFKQEVLASLDGINMPRALTVDEDDNLIVTQTDGEVYV
FELSTETNEGTSEDDWEW
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcgacatgctcctcctttgcagagatcatcgagaatgattttctcaattgcaatatc
tgcttagagaaataccgtaaccccaagtacctgccgtgtcaccacacttactgtgaggag
tgtctgaggaagctggtgccacacaaaaccaaagtctttcagtgcccagaatgcagacag
gaagtcaccctgaatgaaggaggcatcagcaacctgaagacaaacttcttcatcaacagc
cttctcaatattttgccactcaatgagactattggcaagatgtgtagcgtttgcccatca
aaagggcagcacgatagacccgcggtcacccagtgctttgactgccccagtttcatgtgt
cagctctgcacagacgatcacctctcgattccctcacaacaccaacacaaggtgttgagg
ctctctgacaccagctgtgacgctgagatccacgtgaggaagaagatttactgcgctgcc
cacccgaagaaggaaggcggctatttctgcagaccgtgcaatgcctcgatatgtgacact
tgcctcgtcaattctcattcccgccacgaagcgctgtcgatgtccaaagccgcagagtcc
agcacaccagctgtgagggagctcgtcgggaaactcagcaccaaggtccagtctttgacc
agaagccaagacgacctgaatgcggcgctggaaaagctgaaggctgcagaaaggtccata
gagtccaaaatggtggacgcagtggcacaggtgcagagtgccctttttaagcagagggac
gacatcaggaagaaaatgtccgattttgtcaagcaacaggaagcactgtatgagacggcc
aaggcagacctgcagagacagacgaagagtgcagagagcaccagagattactcagagaga
gtcttgagggctggccagaacggcagcatagtctgtttggagaagattctcggagagcaa
gtgaggacactgctggcgtaccagccacccagtatgaaggaggacatccccaagctggtg
gtgaccaaggattacatgtctcaaatggatctgttcaggattgaacttggtcaagaagca
gcaatgcagaaaatccctccagttcctgatcaagctccggagcattggcaagaatttgct
cgcttttccagtccggagctgcctccagtgcagtccccttatgaaaacgtggcaggcaat
tggctaagaccagcccgtcgctgcaacttcacgactgagtgctatgcagagtgcaattcg
aagctgaccggcgtcagcatgttgaacaatggggacatcattgtggcagacgaagccaac
ggtattctgaagtgttattcaatcgatggggatttcaggaggcagatcgctattggagat
acaggcaaagatccatgcagcgttgcagtgtgcggtgacttgatcgcttgcactgcagag
agcaagctttatttcctagattacgacggtgatcgcgtgagacagcttttgctcagaggc
tcagaatccagttaccccatcaccgcttacgaagaccagtacgtagtggttagtgaggga
tcgatgtgttcactgtctctctacggcctcgatggtcaagtcgttgaccgcgtgaagcca
caagggtaccaaggtatccgctttctcttcgttgcggtgagcagtcaagagaatttcatc
gtgtctgacatcggcaagaaatgcctggttatcttcaggaggaatgaggacgtcataaat
atttgcgatgagatctggatgcaaggggtgcctcgatccctgaatcctttcggcgtgtgt
gttgatagttatgatgatatctacgtaggcgagccaggctgcattatctcattctcccct
gaagggatattcaagcaagaagtgctggcttcgcttgatgggataaacatgccacgcgct
ctaacagtggatgaagacgacaacctgatagtgacccagaccgacggggaggtttatgtc
tttgaattatcaacagaaacgaacgagggaacaagcgaggatgattgggagtggtga
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