Carnobacterium maltaromaticum: BN424_464
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Entry
BN424_464 CDS
T02342
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cml
Carnobacterium maltaromaticum
Pathway
cml03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN424_464 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cml03400
]
BN424_464 (mfd)
Enzymes [BR:
cml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN424_464 (mfd)
DNA repair and recombination proteins [BR:
cml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BN424_464 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
CCO09944
UniProt:
K8E232
LinkDB
All DBs
Position
508641..512174
Genome browser
AA seq
1177 aa
AA seq
DB search
MVDIKQLLADTSDIENLLESLEENQTQLVTGLSGSARTLVISTILEKKKKPIILVAHNLF
HASQLIEDFSGFVPEDQLHLFPVDEMIQAEMSISSPEYRAERVAALDFLLSGKKGIVIIP
LSGVRKLITPKEVWKKARFKITKGGELDPTNLAQDLVDMGYTREHLVGKPGEFSMRGGIV
DIYPLTEEYPIRVELFDTEVDSLRYFEADTQRSIASIDKITILPATDTIYTSSMLKAGAQ
DFSEAVERNSDLILDAATKGLFIKNLTPIIDAFDKGEPMDSLALYTDFIYPQHTSVLDYM
HKNSLLIMDEYPRIMETERRLIEEEAEWITSKLEERKILQHQTFANDLRGVLKDVQQGTL
YFSLFQKGMGNIRFKQIHAFQYRNMQQFFGQMPLLKTEMDRWVKQKNTVLVIVSDEDRAK
KVNQTFKDFEIQSKIVKPKKIETGKVQIMMGAIHNGFELPKEKIVIINEREMFNKVTKKV
ARRQTLSNAERLKSYTELNPGDFVVHVNHGIGKYTGMETLEIGGVHQDYMSVLYKDDAKL
FIPVTQINLLQKYVSSDAKTPKINKLGGTEWAKTKKKVAAKIEDIADDLIELYAAREAEV
GFAFSPDSPYQQEFENAFPYTETDDQLRSTAEIKHDMESKKPMDRLLVGDVGYGKTEVAM
RAIFKAVQDGKQAAFLVPTTILAQQHYESLVQRFEDFPVEIGLLSRFRTKKQQNETMDGL
KKGLVDVVIGTHRILSKDIEFLDLGLLIVDEEQRFGVKHKEKLKQLKAQVDVLTLTATPI
PRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEQNPGAIREAIERELTRGGQVFYLYNRV
ETIGKKVEELQMLVPDAKIAYAHGQMTEAQLESILYQFVEGEYDVLVTTTIIETGVDIPN
VNTLFVENADHMGLSQLYQLRGRVGRSNRVAYAYFMYQPDKVLTEVSEKRLQAIKDFTEL
GSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSEMLSEAVVRKRGLEKKDEKTVVE
IDLGINAYLPSTYIEDERQKIEIYKRIRELTDRDEYTTLQDDLIDRFGVFPDEVADLLAI
GAIKMESERALFETIRRVDDCVHLTLSTSGTASLPAEEIMKALGDIPLQATMSVKKEKLV
VTMHLKDINASFEWLGYIEKFVANIAKYRSKLVAGQL
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggtagatatcaaacagttattagcagatacatctgacatagaaaatttattagaatct
cttgaagagaatcaaacacaattagttacaggtttatcaggttctgcacgaacattagtc
atcagtacgattttagaaaaaaagaagaaaccaatcattttagttgcgcataatttattt
catgctagtcaattaattgaggatttttctggttttgttcctgaggatcagttgcatttg
tttcctgttgatgaaatgattcaggcagaaatgtctatttcttcacctgaataccgagca
gagcgagtagctgcgttggattttttactaagtggtaaaaaaggtattgtgattattcct
ctctccggtgttcgtaaactaattacaccaaaagaagtttggaaaaaagcacgctttaaa
attaccaaaggtggcgaacttgatccaactaatttagctcaagatttagttgatatggga
tatacaagagaacacctggttggaaaaccaggtgaatttagtatgcgtggtgggatagtt
gatatttatccattaacggaagaataccctattcgtgttgaactatttgatactgaagtg
gattctctacgttattttgaagcagatacacagcgttcgatagcttctattgataagatt
acgatacttccggcaacggatacgatttatacatcaagcatgttaaaagctggtgcgcaa
gattttagtgaagctgtggaaagaaatagcgatttgattcttgatgcggctacaaaaggc
ctatttataaaaaatctgacccctattattgatgcttttgataaaggtgaaccaatggat
agtttagctctgtatacagattttatttatccacaacatacgagtgtcttagattacatg
cataaaaatagcttattaattatggatgaatatccacggattatggaaacggagcgccgt
ttaattgaagaagaagcagagtggattacgagtaagctggaagaacgtaaaattctacag
caccaaacatttgctaacgatttgagaggcgtgcttaaagatgttcaacaaggaacactt
tatttttctttattccaaaaagggatgggaaatattcgttttaaacaaattcatgcgttt
cagtaccgtaatatgcagcaattttttggacaaatgcccttattgaaaacggaaatggat
cgttgggtgaaacagaaaaatactgtattagtgattgtatctgatgaagatcgagcgaaa
aaagtcaatcaaacctttaaagactttgaaatccaaagtaaaattgtaaaacctaagaaa
atcgaaacaggaaaagttcaaatcatgatgggagcaattcataatggatttgagcttcca
aaagaaaaaattgttatcattaatgaacgcgaaatgttcaataaagtcacaaaaaaagta
gctaggcgtcaaactttatccaatgcagaacgtttaaaaagttacacagagttaaaccca
ggtgattttgtcgtgcatgtaaatcacggaatcggaaaatacactggaatggaaacttta
gaaataggtggagtccatcaagattacatgtccgttctctataaggacgatgcaaaacta
tttattcctgtgacacaaatcaatttactccaaaaatatgtatcgtcagatgccaaaaca
ccaaaaataaataaattaggcggaacagagtgggctaaaactaagaaaaaagtagcggct
aaaattgaagatattgccgatgatttaattgagctttatgcagctcgtgaagcagaagtt
ggctttgcattttcaccagatagcccttaccaacaagagtttgagaatgcctttccttat
actgaaacagatgatcaattgcgtagtactgctgaaattaaacatgatatggaaagtaaa
aaacctatggatcgtttattggttggagatgttggatacgggaaaacagaagtagcgatg
cgtgctattttcaaggcagttcaagatggaaagcaagctgctttcttagtaccgacaaca
atattagcccaacagcattacgaaagtttagtgcagcgtttcgaagattttccagttgaa
atcggtttgttaagtcgttttagaacaaaaaaacaacaaaatgaaacaatggacggatta
aaaaaagggttagttgacgttgtgattggaacgcaccgaattttatctaaagacattgag
tttttagatttaggcttactgattgttgatgaagagcaacgatttggtgtgaagcataaa
gaaaaactaaaacaattaaaagctcaagtagatgtgttaacattgactgctactccgatt
ccaagaaccttgcatatgtctatgttaggtgttcgtgacttatcggttattgaaacacca
ccagcaaatcgttatccagttcaaacctatgttatggagcaaaatcccggcgcaattcga
gaagcaattgaacgagaattaacccgtggcggacaagttttttatttatataaccgtgtt
gaaacaatcggtaaaaaagtagaagagctgcaaatgcttgtaccagatgctaaaatagct
tatgcacatggccaaatgaccgaagcgcaattagaaagcatcttatatcaatttgtggaa
ggtgagtatgatgttctggtgacaacaaccattattgaaactggggtagatattcctaat
gtaaatactttatttgttgaaaatgccgatcatatgggtttatcacaattgtatcaattg
cgaggacgggttggacgaagcaaccgcgtagcttatgcttactttatgtatcagccagac
aaagtattgactgaggtcagtgaaaagagattacaagcaattaaagatttcactgaattg
ggttctggttttaaaatagcgatgcgagatctatccattcgtggtgcaggtaatttatta
ggagcccaacaacatggctttattgattcagtcggatttgatttatactctgaaatgtta
agtgaggcagtcgtacgcaaacgtggacttgagaagaaagacgagaaaacagttgttgaa
atcgatttaggaatcaatgcttatttaccaagcacctatatagaagatgaacgtcaaaaa
attgaaatttataaacgcattcgtgagttaacggatcgtgatgagtacactactttacaa
gatgacttaattgaccgttttggtgtattcccagatgaagttgcagatttactagccatt
ggtgcaatcaaaatggaaagcgagcgggctttatttgaaacgattcgtcgtgtagatgac
tgtgtgcatttaaccttatctacatctggaacagcaagtttgccagcggaagaaattatg
aaagcactaggagatattccgttgcaagcaacgatgtctgtgaaaaaagaaaaattagtt
gtgacaatgcatcttaaagatatcaatgcaagttttgagtggttaggttatatagagaaa
tttgtagctaatatagctaaataccgttctaaattggtcgcaggccaactgtaa
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integrated database retrieval system
