Cucumis melo (muskmelon): 103483283
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Entry
103483283 CDS
T03195
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103483283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103483283
03036 Chromosome and associated proteins [BR:
cmo03036
]
103483283
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103483283
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103483283
mRNA degradation factors
5'-3' decay
Decapping complex
103483283
Chromosome and associated proteins [BR:
cmo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103483283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
103483283
NCBI-ProteinID:
XP_008438061
UniProt:
A0A1S3AVG3
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All DBs
Position
6:complement(1434249..1440720)
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AA seq
492 aa
AA seq
DB search
MNNRGRYPPGIGAGRGGGVNANPSFQSRPHQQQYVQRNLVPNQQYQQQHQHQQLQQQQQW
LKRNQLGGGPADSNVDEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYKTEDVTATKGNEF
EDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKI
DQDNNVIQVVILVPTRELALQTSQVCKELGKNLNIQVMVTTGGTSLKDDIMRLYQPVHLL
VGTPGRILDLAKKGVCVLKDCSMLIMDEADKLLSPEFQPSIEHLIRFLPANRQILMYSAT
FPVTVKDFKDRYLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSII
FCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGID
IQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ
IPPHIDQAIYCR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaacaataggggaaggtatccacctgggatcggcgctggacgagggggaggcgtgaat
gcgaacccttcgtttcagtcaaggccacaccagcagcaatacgtacaaagaaatttggtg
cccaatcagcagtatcaacaacagcaccaacatcaacagcttcaacaacaacaacagtgg
ctgaaaaggaaccagttaggtggcggtcctgctgattccaacgttgacgaggttgagaag
accgtgcagtcggaggctgttgactcgagttcacaagattggaaggcaaggctaaagatt
ccaccacctgatacacgctataaaacagaggatgtgacggctaccaagggaaatgaattt
gaggattattttttaaaacgtgaattactcatgggaatctatgagaaaggctttgaaaga
ccatctcccattcaagaagaaagtattccaattgctttaactggtagtgatattcttgca
agagctaagaacggaactggaaagacagccgcattttgcattcctgccttggaaaagatt
gatcaggataacaatgttatccaagttgttatccttgttccaactcgagagttggctctt
caaacttcacaagtttgtaaggaacttgggaagaatttgaatattcaagtgatggttacg
acaggtggtaccagtttaaaggatgatattatgcgattatatcaaccagttcatttatta
gttggaactcctggaagaatattagatcttgcaaaaaagggcgtttgtgtactgaaagac
tgttctatgcttattatggatgaggctgacaaactcttgtctccagagttccaaccttca
atagagcatctgattcgctttctgcctgcaaaccggcagattcttatgtattccgctacc
ttccctgtaactgtgaaggacttcaaagatagatatcttcacaagccctatgttataaac
ttaatggacgagctcactctgaagggtatcacccaattctatgcattcgttgaagagaga
caaaaagttcactgccttaatactcttttctccaagctacaaattaaccaatcaattatc
ttctgcaattcggtaaatcgagttgagttgttagccaagaaaataacagaacttggttat
tcctgtttctatattcatgcaaagatgctgcaagatcatcgtaacagagtatttcatgac
tttcgaaatggtgcatgtagaaaccttgtttgcactgatttatttacaagaggaatagac
attcaagcagtaaacgttgttattaacttcgatttccccaagaattcagagacatatcta
cacagggttggacgttctggaaggtttggacaccttgggttggccgtgaatttaatcacc
tacgaggatcgtttcaatttgtacaggatcgagcaagaacttggaactgaaataaaacaa
ataccgccccatattgaccaggcaatctactgccggtaa
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