Cucumis melo (muskmelon): 103485310
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Entry
103485310 CDS
T03195
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03022
Basal transcription factors
cmo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103485310
09124 Replication and repair
03420 Nucleotide excision repair
103485310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmo03021
]
103485310
03400 DNA repair and recombination proteins [BR:
cmo03400
]
103485310
Transcription machinery [BR:
cmo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
103485310
DNA repair and recombination proteins [BR:
cmo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
103485310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
103485310
NCBI-ProteinID:
XP_050944569
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All DBs
Position
8:1992924..2000849
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AA seq
451 aa
AA seq
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MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA
KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL
AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS
QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE
AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVV
VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQAITFL
QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
NGLLWEDSKNLRLVVKADIHTHMREHLRRQK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaagtaaagatcatagcgaagaattttatggacatggtggcctccttgcccgcc
atgaagctcgatcaactctatgagaatgcattcatctgcgaagccattctcaggtcactt
ccgccactggctaagaagtttgttttacaaatgttatacattgatgctccagtttcagcc
aagtccatggaggagtgggtgctcccagatggagtctcaaagtataaggttgctgttgat
cgattgattcaattgagagtattcattgagactgcagataggaaaagagaaacaacctac
cggctaaatccaactttccaagcaaacctccaaaagcttttaatacatggtgaagttcta
gccagagaaccgatgccttctaatataaccgtgaggcttccaagtttggaagatctcgag
gcttatgctctggatcagtgggagtgcttcttgctgcaattgataaactcgggccaagca
gagaagccatcaaatattagttcttctgtgatgaaagttttccagaaaggccttttaagt
cagagggataaagaagctccacgattaactgagagtggtttccagttcttgttgatggaa
acaaatgcacaactttggtatatcatccgagaatatatatctaacgctgaggagcgaggt
gtggatcctgcagatttgatttcttttctgctagagcttagttttcacgtcacaggagag
gcttatgatattgatacactgtcagatgaacagaggtatgctatcaaggaccttgctgat
ctgggactagttaagcttcagcagggtagaaaagagagttggttcatacctactaaatta
gccacaaatctttcaatgagtttggcagattcctcttcaaggaaacaaggatttgttgtt
gtggagacaaatttcaggatgtatgcttattcttcttccaaactacattgtgaaatatta
cgtcttttttcaaggattgagtatcaacttccaaatcttatagttggagcaataacgaaa
gaaagcttgtataatgcttttaagaatgggattacagctgagcaggcaattacttttcta
caacagaatgcacatcctcgtgttgcagagagaataccatcagtacctgaaaatgtcaca
gatcagattaggttatgggaatcagatcttaatagggttgatattactcccgcacatttt
tacgatgaatttccttccagggaagttttcgaggctgcttgcgattatgcacgagagtgg
aatgggttgctatgggaggattcaaaaaacttgcgactggtagtgaaggcagacatacac
acacatatgcgagaacatcttcggcgtcaaaagtag
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