Cucumis melo (muskmelon): 103494190
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Entry
103494190 CDS
T03195
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103494190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmo03041
]
103494190
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103494190
Spliceosome [BR:
cmo03041
]
Complex A
U2 snRNP components
U2 related factors
103494190
Complex B
103494190
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
IFP_35_N
Motif
Other DBs
NCBI-GeneID:
103494190
NCBI-ProteinID:
XP_016901392
UniProt:
A0A1S4DZJ6
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All DBs
Position
2:23077320..23081786
Genome browser
AA seq
1117 aa
AA seq
DB search
MEEGRSKSRRDDLDEPKKSHRERDRERDKERNGDRGRDKEKRDRERSYDSEELVQHEREK
EKLRRDKDKTRNRDDERDRGRDRRKERDRAREKTRDKEKRERAREKEKDKRDRDRDRERR
ERERDREKERDKDRRKRREVVSESDEDSTEHGRKRRRRDDDDHRAHESNSRINKQRDHID
ESPREKSEEDGFDKNETKPTREEELENEQKRLDEEMEKRRRRVQEWQKSRRLKEEADEDK
QGELNADEPKSGKTWTLEGESDDEYENARPTETDMDVDENSKPLVDGEQVAVNFNNGNEA
AAPPPQDSIDGDAADDEIDPLDAFMNSMVLPEVEKLNKVEVPTVNGDKIAELKSRDKPSD
QSGGKAQRRIPNKSMGRIIPGEDSDTDYGDLENDADTLEDEDDDEFMKRVKKTKAEKLSI
VDHSKMDYQPFRKNFYIEVKEILRMTSEEVAAYRKQLELKIHGKDVPKPVKTWHQTGLTS
KILETIKKLNYEKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQSPVV
PGDGPIGLIMAPTRELVQQIHSDIKKFSKVMGLRCVPVYGGSGVAQQISELKRGAEIVVC
TPGRMIDILCTSAGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA
TFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPENERFLRLLELLGEWYEKGK
ILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAAR
GLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFIAEEDSRYAPDLVKALELS
EQVVPDDLRALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFE
EDKSDSEDEDDGVRKAGGDISQQAALAQIAAIAAATKVSAVSITTPSSAAQLLPNGGLPV
SLPGVLGLTIPGTMPVIPSATLPTVTNDGAAARAALAAAMNLQHNLAKIQASAIPEHYEA
ELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFFPPGKIAGPGERKLYLFIEGPT
EQSVKRAKAELKRVLEDITNQTLSLPGGSQPGRYSVV
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagggagaagtaaatctagaagagacgatttggatgaaccaaagaagagtcat
cgtgaacgcgatagggaaagggataaagagagaaatggagatagaggcagggacaaggag
aagagagatcgggaaaggagttatgattctgaagagctggtgcaacacgagagggaaaag
gaaaaacttagaagggataaggataaaacacggaatcgggatgatgaaagagatagagga
agggataggaggaaggagagggaccgggcgagggagaaaaccagggacaaggagaagaga
gaaagggcaagagagaaagaaaaagataagagggatagagatagagacagggagaggaga
gaacgtgagagagatagggaaaaagaaagagacaaagatagaaggaagcggcgggaagtt
gttagcgaatctgatgaagattctactgaacatggtaggaagcggcgtaggagagacgac
gacgaccatagagctcacgaaagtaatagcaggataaataagcagagagatcacattgac
gagagtccacgagaaaagagtgaagaagatggatttgataagaatgaaacaaaaccaact
cgtgaagaggagttggaaaatgaacaaaaaaggttagatgaagaaatggaaaaacgaagg
cgaagagttcaggagtggcaaaagtcacggagattgaaagaagaagctgatgaagataag
cagggtgaactgaatgctgatgaaccaaaatctggcaagacatggacccttgaaggtgaa
tctgatgatgagtatgaaaatgccaggcccactgagacggatatggatgtggatgaaaat
tctaagccacttgtagatggtgaacaggttgcagtgaacttcaacaatggcaatgaagca
gctgcacctccaccgcaagatagcattgatggtgatgcagctgatgatgaaattgatcct
ctggatgcattcatgaactccatggtgttacctgaagtggagaagctaaacaaagttgag
gtccccacagttaatggtgataaaattgcagagttgaagagcagagataaaccaagcgat
cagagtggtggtaaggctcaaagaagaattccaaataaatcaatgggcagaataattcct
ggtgaagattctgacacagactatggagatcttgagaacgatgcagatactttagaagat
gaagatgacgacgagttcatgaaaagggtgaagaagacaaaggctgagaagctctctatt
gttgaccattcaaagatggactatcaacctttccgtaaaaacttctatatcgaagtgaag
gagatattgaggatgacttcggaagaagttgctgcttatcggaagcaattggaattgaag
atacatggaaaagatgttccgaagcctgttaaaacctggcatcaaactggacttacgagt
aaaatcttagaaacgatcaagaaacttaactatgagaagccaatgccaattcaagctcag
gcattgcctatagtcatgagtggccgagattgcattggtattgccaaaactggatctgga
aaaacgcttgcatttgtgcttccaatgctgaggcatatcaaggatcaatcacccgtcgta
cctggtgatggtcctattgggcttataatggctcctaccagagagttggtccagcagatt
cacagtgacataaaaaaattttcaaaggttatgggtctaaggtgtgtgcctgtatatgga
ggttctggtgttgcccaacaaattagtgagcttaagcgtggagctgaaatagtagtttgt
actccaggaaggatgattgatatactctgcactagtgctggtaaaataacaaatctgcgt
agagttacatatttagttatggatgaagctgataggatgtttgacatgggatttgaaccg
cagattactcgaattgtgcagaatattcgaccagaccgtcaaactgtactattttctgct
acttttcctcgtcaagttgaaattttggctcgtaaagtgttaaacaaacctgttgaaata
caggttggtgggaggagtgttgtgaataaggacataacacagttagttgaagtgaggcct
gaaaatgagaggtttttgagactgttagaactgttgggagaatggtacgagaaaggcaag
attctaatttttgtccactcacaggagaaatgtgatgccctctttagggatctccttaag
cacggttacccttgcctctcactccatggagcaaaggatcagactgatcgtgagtctacc
atatcagatttcaaaagcaatgtgtgcaacttgttaattgcaactagtattgctgccagg
ggtttagatgtcaaggagctggagctagtgatcaattttgatgtcccaaaccactatgaa
gattatgtgcatcgcgtgggtcgcacaggccgagccggtcgtaaagggtgcgccatcaca
tttattgctgaggaagattcaagatatgcaccagatctggtgaaagcattggaactctcc
gagcaggttgttcctgatgacctgagagctcttgctgatagtttcatggcgaaggtgaat
caaggactagagcaggcccatggaactggctatggtggcagtggtttcaaatttaatgag
gaagaagatgaagtgaggagggcagcaaagaaagcccaagctaaagaatatggttttgag
gaggacaaatcagattcagaagatgaagacgatggtgtccggaaggcaggtggtgatatc
tcacagcaggcagctttggcccagatagctgctatagcagctgccacaaaagtcagtgca
gtttcaatcacaactcccagctctgctgctcagctacttccaaatggcggattacctgtt
tctctgcccggtgttcttgggctcacaattccaggaacaatgccagttattcctagtgca
acattgcctacagttactaatgatggggccgctgcaagggcagcactagcagctgcaatg
aacttgcaacacaacctagccaagattcaagccagtgcaatacctgaacactatgaagca
gaattggaaattaacgatttcccacagaatgctcgatggaaggtaacccataaggagacc
ttaggcccaatttcagagtggactggagctgctattactactaggggacagttctttcca
ccaggcaagattgctggacctggagagcgcaagctttacttgttcattgaaggtcctacc
gaacagtctgttaagagagctaaagctgagttaaaacgtgtccttgaggacattacaaac
caaacactgtcactacccggtggatcacaaccaggcagatattcagtcgtttaa
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