Cucumis melo (muskmelon): 103499294
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Entry
103499294 CDS
T03195
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03013
Nucleocytoplasmic transport
cmo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103499294
09122 Translation
03013 Nucleocytoplasmic transport
103499294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103499294
03041 Spliceosome [BR:
cmo03041
]
103499294
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
103499294
Spliceosome [BR:
cmo03041
]
Complex C
Other components
EJC/TREX
103499294
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103499294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
103499294
NCBI-ProteinID:
XP_008460496
UniProt:
A0A1S3CC63
LinkDB
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Position
9:12561772..12595122
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AA seq
614 aa
AA seq
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MDLSLYLEEFRKAILQVGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
SSAVQSTEPVMQYGMSIDEKETSQGHIPRLLDIVLYLCEKEHVEGGMIFQLLEDLTEMST
LKNCKDIFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKASDVVFCGRILMFLAH
FFPLSERSAVNIKGVFNTSNETKYEKQLPDGFSIDFNFYKTFWSLQEFFCNPASLALAST
KWQKFACSLMVVLNTFDAQPLSDEEGDANILEEESATFSIKYLTSSKLMGLELKDPSFRR
HVLMQCLILFDYLKAPGKNEKDIPSETMREEIKSCEERVKKLLEVTPPRGKDFLQKIEHI
LQRENNWVWWKRDGCAPFEKQPIEKKTINDVTKKRRPRWRLGNKELSQLWKWADQNPNAL
TDPQRVRSPAISEYWKPLAEDMDESAGIEAEYHHRNNRVYCWKGLRFSARQDLEGFSRFT
DHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKREEAKGAVQQVDENQMATPASENDGEG
TRSDPDGPSAGMDVDTAIATGNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMI
DGETDAEVDLDTAG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggatctatcactttacttggaagagttccgaaaggccatactgcaagtggggccacca
gaaaattttgctctgcagacagttcaagatgttattagacctcagaagcacacaaaattg
gcccaagatgaaaatcagttgttggaaaatattctacggcgactacttcaagaattagtg
tcatctgccgtccaatcaacagagccagtaatgcagtatgggatgtctattgatgaaaag
gaaacttcacagggtcatattccacgtcttcttgacattgtcctatatctttgtgagaaa
gagcatgtcgaaggaggcatgatattccaactgttggaggacctgactgaaatgtcaaca
ttgaagaactgcaaagatatttttggttacattgagagtaaacaagacatattgggaaag
caagagctttttgctcgcggaaaactcgtcatgttgagaacgtgcaatcaattgctccgt
cgtctatcaaaggcaagtgatgtggtgttttgtggacgcattctgatgtttctagcacat
tttttccctctatctgaacgctccgctgtgaatataaaaggagtgtttaacacctccaac
gaaacaaaatatgagaaacaactccctgatggtttttctattgatttcaacttttacaag
accttttggagtttacaggaattcttttgtaatcctgcttcccttgcactcgcttcgacg
aagtggcaaaagttcgcatgtagtttaatggtcgtattgaatacatttgatgcacaacct
ttgtctgatgaagagggagatgctaacatcttggaggaagagtcagcaaccttcagcata
aaatatcttactagtagtaaactgatgggtttagaattgaaggacccaagttttcggcgt
catgttcttatgcagtgccttatattgtttgattatctaaaggccccaggaaaaaatgag
aaagatattccatctgaaaccatgagagaggaaattaaatcttgtgaagagcgtgtgaag
aagttgcttgaggtgacaccgcccagggggaaagatttccttcagaagattgagcatata
ttacaacgggaaaataattgggtatggtggaaacgtgatggttgcgctccttttgaaaag
caaccgattgaaaagaaaaccatcaatgacgtaactaaaaaacgtaggccaagatggaga
ctggggaataaagaactctctcaattgtggaaatgggcagatcagaatccgaatgctttg
actgatcctcaacgtgttcgcagtcctgcaatttctgagtattggaaacccttggcagaa
gatatggacgagtctgctgggattgaagctgaatatcatcatagaaataaccgagtttat
tgctggaaaggccttcggttttcagctcggcaggatttagaaggattttctcggttcacc
gaccatggcattgaaggtgttgtgccattggaactcctgccacctgatgtacgagccaag
taccaagccaaaccaaatgagagatctaaacgtgctaaaagggaagaagcaaaaggggca
gtccagcaagttgatgaaaatcagatggcaactccagctagtgagaatgatggcgaagga
accagaagtgatcctgatgggccatcggcagggatggatgtcgatacagctattgccacg
ggcaatgtatctcaaggtggtatttcaactccagaagaaaataaactaagctctgacacg
gatattggtcaagaggcaggccagttggaagccgatgctgaggtagagccgggcatgatt
gatggcgagacagatgcagaggttgatttggacactgcaggttga
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