Cucumis melo (muskmelon): 103501218
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Entry
103501218 CDS
T03195
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103501218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmo03021
]
103501218
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103501218
Transcription machinery [BR:
cmo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103501218
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103501218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Ribonuc_2-5A
VHS
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
103501218
NCBI-ProteinID:
XP_008462960
UniProt:
A0A1S3CJP9
LinkDB
All DBs
Position
12:complement(6718046..6725643)
Genome browser
AA seq
1012 aa
AA seq
DB search
MTRFMESEKLLISRGNPRNSAYPSDRPIPTTSGRTMPNELPQKPPPSIAHRFRAQLKQRD
DEFRVSGHDVVPPPTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLIC
ARILEVPVDQKLPSLYLLDSIVKNVGHEYISYFSSRLPEVFCEAYRQVHPNLHNAMRHLF
GTWATVFPPSIIRKIEAQLSQLTAQESSGLTSSRASESPRPTHGIHVNPKYLRQLEHSVV
DKLLALQHTQDSRGTSAIKVHDKKLASGYEEYDYDHADALEHGGAQEFHSMGSMGHDSFS
LGTNKANVKLAKSSLSSRIGHHRPLQSLGDELESVRASPSQNVYDYEGSKILDRNEDTNK
WRRKQYPDDNMNGLENTSSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSIS
GIDNKATPVTWQNTEEEEFDWEDMSPTLADRGRNNDMLKPTVPPSRFRTRSGFERSNAMP
IEPGMRSNWSSQVQLPGIDSSIVIEDVVHSTPDIWKMHNHISQTSQNLMNNKGPGRNFQM
PMLGRGITSSGGEKMSPYGDKLLTNDALHRPTNIASRLGSSGLDSNMESQSIVQSMGPRH
PLNLSNSCPPSRPPVFPVPRHNTSQFESLNGSNSFMNSANRTFLPEQQMNNLRNKELSLT
TKSPQVGNQHTGHIPLTRGNQLQSMPLKPQFLPSQDMQDNFSGSAVPPVLPHLIAPSLSQ
GYISQGHRPANSEGLSSSAPIGQWNLSVHNSSSNPLHLQGGPLPPLPPGPHPTSGPTIPI
SQKVPGQQPGTAISGLISSLMARGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYA
DLPRQCMTCGLRFKTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGT
EAVPGFLPAEVVVEKKDDEELAVPADEDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNA
PDGQTAGMDRSQLGPIVHAKCRTETNVVPSESFDQDEGGVSEDGNRRKRLRS
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgacccgtttcatggaatcggaaaagctcttaatttcacgaggaaaccctagaaattct
gcatatccatctgaccgcccaatccccaccaccagcggcaggactatgcccaatgagttg
ccacaaaagcctcccccttctatagctcaccggtttagagctcagcttaagcagcgggat
gatgaatttagggtttctggccatgatgttgtaccccctcctaccgctgaggatattgtg
cagttgtatgacctcatgttgtcggagctcacttttaattcgaagcccatcattaccgat
ctcactgttcttgctgatgagcagagagaacatgggaagggcattgccgacttaatttgt
gcgcggattctcgaggttccagttgaccaaaaacttccttcattatatctattagacagc
atcgttaagaatgttgggcacgagtacatcagttatttctcatctcgtttacctgaggtg
ttttgcgaggcttacaggcaagttcatcctaatttgcacaatgcaatgcgccacctcttt
gggacttgggcaactgtgtttccaccatccatcattcggaagatcgaagctcaactttct
cagctaacagcacaagagtcatcaggtttgacatcctcgagggcttctgaatctcctagg
ccaactcatggtattcatgtcaatccaaaatacttgcgccagctggaacactcagtggtg
gataaacttttagctttacagcatacccaagattcaagagggacctcagctataaaagtt
catgataaaaagcttgcttctggatatgaagagtatgactatgatcatgcggatgctctt
gaacatggtggagctcaagaattccattcaatgggaagcatgggccatgattctttttcc
cttggaacaaataaagcaaatgtaaagctagcaaaatcatctctgtcttcaagaattgga
caccatagacctctacaatcacttggtgatgaacttgaatcagtcagagcctcaccctcg
cagaatgtatatgattatgaaggttctaaaattcttgatagaaatgaggataccaataaa
tggaggagaaagcaatatcctgacgataatatgaatggacttgaaaatacttcttcatat
aatattagaaatggacatgcacttgagggaccaagagctttaattgaagcatatggaagt
gataaaggaaaaggttatttaaacgacaatccacctcaagctgaacatttttctattagt
ggtatagacaacaaggcaactccggtaacatggcagaacactgaagaagaagagtttgat
tgggaagatatgagccccacattagctgatagaggcagaaataatgatatgttgaaacca
actgtcccaccttcaagatttaggacaagatcaggatttgaaagatcaaatgctatgcct
atagagccaggaatgagaagcaattggtctagtcaggttcagctaccgggtattgattcc
tccatagttattgaagatgtggtccattcaacacctgatatttggaaaatgcacaatcac
atttctcagacatctcagaacctcatgaacaataaaggaccgggaagaaatttccagatg
cctatgttggggagaggcataacttcctctggtggtgagaagatgtcaccctacggtgac
aagcttttgaccaatgatgctttacataggcccactaacattgcttcgagattgggttct
tctggtcttgactctaacatggagtcgcaatcaattgtacaatctatgggcccaaggcat
cctctgaatctttctaactcttgcccaccctccaggcctcctgtttttcctgtaccaaga
cacaatacaagtcagtttgagtctctaaatggtagcaattctttcatgaattctgcaaat
aggacttttttgcctgagcagcagatgaataacttgagaaataaggagctaagtcttaca
actaagtcaccacaagttggcaaccaacatactgggcatattcctttaactcggggaaac
caattgcagtccatgcctttaaagccgcaatttctaccatctcaggacatgcaagataat
tttagtggatcagcagtacctccagtgttaccacatttaattgcaccatctttgagtcaa
ggatacatttcacaaggacatcgccctgctaatagtgagggtttgtcaagttctgcccct
attggacaatggaatttgtctgttcataatagctccagtaaccctttgcatttacaagga
gggccgctgccacctcttccacctgggcctcatcctacttctggtccaactatacctatc
tctcaaaaggttcctggtcagcaacctggaactgcaatttctggcctcataagttctctc
atggcccggggtttaatctcattgaacaatcaagcttctgtacaggattctgttgggtta
gaattcaatccagatgtactcaaggtgcgacatgaatcagcaataactgctctatatgct
gatcttcctcgacaatgcatgacctgtggtcttcgattcaagacccaggaagagcatagt
aatcatatggattggcatgtcactaaaaatcgtatgtcaaaaagtaggaagcaaaagcct
tcacgcaaatggtttgtaagtattagcatgtggcttagcggtgcagaggctctgggaacg
gaggcagttccaggatttttgcctgctgaggtcgttgtagagaaaaaagatgatgaagaa
ctggctgttcctgctgacgaggatcagaagacatgtgcattatgcggagaacctttcgag
gatttttacagtgatgaaacagaggagtggatgtatcggggtgctgtctatatgaatgca
cctgatggacaaacagccggcatggatagatctcaattagggcccatagtgcatgctaaa
tgcaggactgaaactaatgtggttccctctgaaagttttgaccaagatgaagggggagtt
agtgaagacggtaatcgaagaaaacgattgcggagctag
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integrated database retrieval system
