Cucumis melo (muskmelon): 103504674
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Entry
103504674 CDS
T03195
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03022
Basal transcription factors
cmo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103504674
09124 Replication and repair
03420 Nucleotide excision repair
103504674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmo03021
]
103504674
03400 DNA repair and recombination proteins [BR:
cmo03400
]
103504674
Transcription machinery [BR:
cmo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
103504674
DNA repair and recombination proteins [BR:
cmo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
103504674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
103504674
NCBI-ProteinID:
XP_008467294
UniProt:
A0A1S3CUH8
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All DBs
Position
9:21538480..21545064
Genome browser
AA seq
423 aa
AA seq
DB search
MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA
QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF
FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN
QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG
SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG
GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP
KVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLAT
FDE
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatggggaaaataggcgattgaatggggaagctgatgaagaagatgatgatgat
gatgccaatggacttgctgcgtgggaaaggacttatgcggatgataggtcgtgggaagcc
ctgcaagaggatgagtctggactcctttgtccgatcgacaataaggcaatttaccatgcc
cagtatcgtaggcgccttcgtaccctttcttccttagcaaccactgctcggattcagaag
ggtcttattcgctatctctatatcgtcatcgacttctccaaggctgctacagaaatggat
ttccgaccaagtcgaatggctgttgtggcaaaacatgtagaggctttcgtaagggaattc
tttgaccaaaatccactcagccagattggtttggtgactataaaagatggagttgctcat
tgcttaacagatcttggtggaagtcctgaatctcatgttaaagcgttaatgggtaaactg
gaatgctcaggtgatgcttccttgcagaatggtctggaacttgtccacagctatctaaat
caaattccatcatatgggcatagagaagttttagtcttatactctgctcttaattcttgt
gatcctggggacatcatggagacagttcagaaatgcaaaacttctaaaataaggtgttca
gttattggtcttactgcagaaatttttatatgcagacatctctgccaagaaactggtggc
tcatactctgtcgcattggatgagtctcacttcaaagagttgctattggagcatgcaccc
ccacccccagcaattgcagactctgccatgcctaatttaatcaagatgggttttccacaa
agagcagcagagagttccattgcaatatgttcatgtcacaaggaagctaaagttggaggg
ggctatacttgccctcgatgcaaagcaagggtttgtgagcttcccacagagtgtcgaatt
tgtggactgactcttatctcctcaccccatttggctaggtcgtatcatcatctttttcca
attataccatttgatgaagtctctgataaagtatttcatgacccacgacaccaacttcca
aaagtttgctttggctgccaagaaagcctcatgaatcctggcacacgtaacagtccaggc
atccgtgtttcttgcccaaagtgcaaacaacacttctgtcttgattgtgatatttatatt
cacgagagcttgcacaattgtcctggctgtgagagtttcaggcatcccaaattagcgact
tttgacgaatga
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