Caldicellulosiruptor morganii: OTK00_002027
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Entry
OTK00_002027 CDS
T08774
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cmor
Caldicellulosiruptor morganii
Pathway
cmor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OTK00_002027 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmor03400
]
OTK00_002027 (mfd)
Enzymes [BR:
cmor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OTK00_002027 (mfd)
DNA repair and recombination proteins [BR:
cmor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OTK00_002027 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
SNF2-rel_dom
AAA_22
UB2H
TPPII_C
Motif
Other DBs
NCBI-ProteinID:
WAM33519
LinkDB
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Position
complement(2016613..2020065)
Genome browser
AA seq
1150 aa
AA seq
DB search
MLRVFEKLDEFLNIARSVSQKNLPILAVNLGEMGKALLVQALCQKFNKKVLFITHQKNKL
EWERRFKNLFDRVVVLQERENPLINSFAKSKDSDIQRAEEFVRIFEEGFDVLVLSPQNLL
EKYADFKFEYITLEENKEMDFTGFLNTISRYGYERVKVVERKGQFSQKGGIIDIYPVASH
YPIRVEFFGDTIDTIRYFDVETQKSFERISLVKIYKACEWDLNIDFSDGLKKVEADFKKL
QSKLKGDAKKNLEESFKDTIDGLDLKIDRLYPYYYQNFKTIFDIFDDCLIVIDEYNQVYS
SLKSFEEHTEEVYKDLLEKGYILPGMAECYFKVNEILAFFSNSIILQTFTQSIRELQVKS
IFSFNNLREIPSYNASKSLLIDDIKYYLSKGYTINIFAGSATSLEDLRYDLEKNEIEFRL
TDKVSESEKGVFLLAGSIEKGVEIEELKWVCLSFFNFENKKIKDIKKRPKSKKEAFYTIE
DLKTGSYVVHRMYGIGRFLGFEKITVEGVTKEYLKLEYANNSYLYVPTTNLDVIEKYIGT
GDLEPKLSKLGSLEWQKQKQKVRKSLEVVAKDIVELYAKRQLKKGFKFSPDTVWQKEFEE
KFPYAETEGQLQAIEEIKKDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVALL
VPTTILAHQHYMTFVQRMKDFPITIEVLSRLKTERQQKKILKGLKEGTIDIIIGTHRLLS
NDVKFKDLGLLIIDEEHKFGVEHKEKIKKLKENVDVLTLTATPIPRTLNMALLGIRDLSI
IEDPPEDRFPVQTFVMEYNEKVIKEAILKEILRGGQVFYLYNRVKDIEEVVNRLEKLLGE
GIKIAFAHGRMDERQLEEVLIDFINGKYDVLVTTTIIESGVDMPNVNTLIVEDADRLGLA
QLYQLRGRVGRSNKLAYAYFTFRKDKVLSEEAAKRLAAIKEFTELGSGFRIAMRDLEIRG
AGSIVGKLQHGHINAVGYDMYIRLLSEEIRRLKGENVQPEIEPQIDIKISAYISSEYIDD
DRERINMYKKISSIEKKEDAEEIYEELIDRFGDVPKEVDNLIKIAYIKCLCKKLGIVGIL
QVDEQKVKLQFVSQEAAQLFKKFLSEIKILYAEGRDCSITFPASKDILDFLVKTLEDITE
KVALPTGALK
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
ttgctgagagtttttgaaaaacttgatgagtttttaaacattgcaaggtcagtttcacaa
aaaaatctccccatccttgctgtaaaccttggcgagatggggaaggcactcttggtccag
gcgttatgtcaaaaatttaacaaaaaagttctttttatcacacatcaaaaaaataagctt
gagtgggaaagaagatttaaaaatctttttgacagagtggttgttttacaggaaagagaa
aatccgcttataaattcgtttgcaaaaagtaaagattcagatattcaaagggcagaagaa
tttgtcaggatttttgaagaagggtttgatgtgcttgttttgagcccgcagaatttgctt
gaaaaatacgcagatttcaagtttgagtatatcacacttgaagagaataaagagatggac
tttactggatttttaaataccatatcaaggtatggatatgaaagagttaaagttgttgaa
agaaaagggcagttttctcaaaaaggtggaataatagatatataccccgtggcaagccac
taccctattagagtggaattttttggtgatactattgacaccataaggtattttgatgtt
gagacacaaaagtcatttgaaagaatttctcttgtaaagatttataaagcctgtgaatgg
gatttaaatattgacttttcagatggtttaaaaaaggtagaagctgattttaaaaaactt
caaagcaagctcaaaggcgatgcaaagaagaatctggaagaaagttttaaggatacaatt
gatgggcttgatttaaagattgacagactgtatccctattattatcagaacttcaaaacc
atatttgatatatttgatgattgcctcattgtaatagatgagtataatcaggtttatagc
agtttgaaatcttttgaggagcatacagaggaagtttacaaggaccttttggaaaaagga
tatatactgccagggatggcagagtgttattttaaagtcaatgaaattttagcttttttt
tctaattcaattattcttcaaacatttactcaaagtataagagaactgcaggtaaaaagc
attttttcttttaataatctcagggaaattccatcctacaacgccagcaaaagccttttg
atagatgatattaaatattacctttctaagggctataccataaacatttttgccggtagc
gcaacatcacttgaagatttaagatatgaccttgaaaaaaatgaaatagaattcaggttg
acagataaagtttcagaaagtgaaaaaggggtttttcttcttgcagggtcgattgaaaag
ggagtggagattgaggagttaaaatgggtctgccttagctttttcaattttgagaacaaa
aagatcaaggatatcaaaaaaagaccaaaatcaaagaaagaagctttttacaccatagaa
gacctaaaaaccggaagctatgttgtgcacagaatgtatggtattggcagatttttggga
tttgaaaaaataactgtggaaggtgtgacaaaggagtacttaaaacttgaatatgcaaat
aattcttacctgtacgtaccaaccacaaaccttgatgtaattgaaaaatatattggcact
ggagatttagagccaaaactatcaaaacttgggagcctggagtggcaaaaacagaagcaa
aaggttagaaaatcacttgaggttgtggcaaaagatatagttgagctgtatgcaaaaagg
cagctaaaaaagggttttaagttttcgcctgacaccgtttggcaaaaggagtttgaagaa
aaatttccatacgccgaaacagaaggtcaacttcaggcaattgaagagattaaaaaggat
atggaaagcgaaaagccaatggacaggattctgtgcggggatgttggttatggcaagaca
gaagtggctatgcgtgcagcatttaaagctgtgatggactcaaagcaggttgcactgctt
gttccaactacaatactggctcatcagcactatatgacatttgtccagcgtatgaaagat
tttccaataacaattgaagttctttctcgtttaaaaacagaaaggcaacagaagaaaatt
ttaaaaggattgaaagaggggacaattgatattatcattggaacacatagacttttatca
aatgatgtgaaattcaaggacctgggacttttgattattgatgaggagcacaaatttgga
gttgaacacaaggagaagataaaaaagttaaaggaaaatgtggatgttttaactcttact
gcaacacctattccaaggacactgaacatggctcttctgggcataagagatctcagcata
attgaagatccgccagaggacaggtttcctgtgcaaacctttgtcatggaatataacgaa
aaggtaataaaggaagcaatcttaaaggagattttgcggggtgggcaggtattttatctc
tacaacagggtaaaagatatagaagaggttgtaaacaggcttgaaaagcttctgggggaa
ggtataaaaatagcctttgcacacggcagaatggatgaaagacagttggaagaggtgctg
attgactttataaatggtaaatatgatgtgcttgtcacaaccacaataattgaatcaggc
gttgatatgccaaatgtgaacacattgattgtggaagatgcagacaggctggggcttgcc
cagctttaccagcttcgtggaagggttgggcgttcgaacaagcttgcatatgcatatttc
acattccgaaaagacaaggttttatccgaagaggctgcaaagcggcttgctgctataaaa
gaatttacagaacttggttcgggttttaggattgcgatgagagaccttgagataagaggt
gcaggttcaattgttggaaagcttcaacatggacacataaatgctgttggatatgatatg
tatataaggcttttatcagaagagataagaaggctcaaaggtgagaatgtccagcccgag
attgagccacagatagatataaaaattagtgcctatattagcagtgaatacattgacgat
gacagggaaagaattaacatgtacaagaagatttcatcaattgagaaaaaagaggatgcc
gaagaaatctatgaggagcttattgacagatttggagatgttccaaaagaggttgataat
ctcataaagattgcttatattaagtgtctgtgcaaaaagctggggattgtgggtattttg
caggttgatgaacaaaaggttaaactgcagtttgtatcgcaggaagcagcccagcttttc
aaaaagtttctttctgaaataaaaattttatatgcagagggcagggattgttcaataact
tttcctgcatcaaaggatatactggactttttggttaaaactctggaagatatcactgaa
aaggttgctttacccacaggtgctttaaaataa
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