Cucurbita moschata (crookneck pumpkin): 111432763
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Entry
111432763 CDS
T05248
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03013
Nucleocytoplasmic transport
cmos03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111432763
03015 mRNA surveillance pathway
111432763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111432763
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111432763
mRNA cycle factors
P-body specific factors
111432763
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
111432763
NCBI-ProteinID:
XP_022925470
UniProt:
A0A6J1EI29
LinkDB
All DBs
Position
Unknown
AA seq
513 aa
AA seq
DB search
MKDPLERTKVVIRHLPPSLPHSDLFHNIDDRFAGRYNWCYYRPGKTSQKDQRYARAYIDF
TRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
FLKLIAKPAEHLPSAEIQLERKEAEQSAAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
KVKRGGGASSRKPESNSVKRGMEKKKYILKESVKNTNRRDKSNFILVPRREDQLATSGGI
GISDVGTADSGKKKILLLKGKERDISHVSDGMLQLQSATSSGTSPASASKHNQRREASGS
MIRSILLNNESRHGQTSSGAPSHQKIQILNSDNGKRLPRSINARSGSNDMSSNEPNPSGL
EGDGKRPSDGKPSKKELHGLGSLSEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV
AQSSHLLSDSVEAYRGEMKEDIHVSRTGDVTTTVSGRSSSVENGSVRHGGRRGAGHVMKD
DGSSNPNEGKPSKRGVVSGHEKQVWVQKSSSGS
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccgttggagcggaccaaagtagtgattaggcacttgcccccttctcttcct
cactcagatctcttccacaatattgatgatcgattcgctggtcgctacaattggtgttac
tatcgtcctggaaagaccagtcagaaggaccagagatatgctcgagcttacatagatttt
acgcgacctgaagatgtttttgagtttgcggagttttttgatgggcatgttttcgttaat
gagaagggtgctcagtttaaggctgtagttgaatatgcaccttcacagcgtgttcccaga
tcatcgaccaaaaaggatggtcgtgaggggactatatacaaagatccggattatttggag
tttctcaaacttattgcaaagcctgctgagcatcttccaagtgctgaaatacagttggaa
agaaaagaagcagagcaatctgctgctgcgaaagaaactccaatcgttacccctctcatg
gagtttgttcgccagaaacgagcagttgagagcggaacgcagggatcttcagtacctcgg
aaggtcaaaagaggtgggggagcatcctctagaaagcctgagtcgaattccgtgaagcga
gggatggagaagaagaagtatattttaaaggagagtgtgaagaacacaaatcgcagagac
aagtcaaatttcattctggtgcccaggcgagaggatcagttagctacctcaggtggaatt
ggaatttctgatgttggtacagctgactctggaaagaaaaaaattctgcttctcaagggg
aaagagcgagatatatctcatgtttctgatggtatgctacagttgcagagcgcgacatct
tctgggacttctcctgctagtgcatcaaaacataatcagaggcgtgaggctagtggaagc
atgatcagaagcattcttttaaataatgaatcacgtcatggacagacttcatcaggagct
ccatctcatcaaaaaattcagatcctgaactcagacaatgggaagcgactacctcgttcc
attaatgctcgatctgggtctaatgatatgtccagtaatgaaccaaatccatctggtttg
gaaggggatggaaaaaggccttcagatggtaaacctagtaagaaggaacttcatggcctg
ggtagtcttagcgagaagcaagaaaaacgaataagaaacaaagatagacctgatcgtggt
gtgtgggcgccacgtagtcgttcagatgcttcagtctcacaacttgaggaatcctctgtt
gcacaatctagccatttgctttctgactcagttgaagcataccgtggggaaatgaaagaa
gatattcatgtaagcaggactggggatgttacaactactgtgagtggacgtagcagttca
gtggaaaatggttctgttagacatggtggacgtcgtggggctgggcatgtcatgaaggat
gatgggtcatcgaacccaaatgaagggaagccgtctaaaagaggtgttgtcagtggtcat
gagaaacaagtatgggttcagaagtcatcttcaggttcttaa
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