Cucurbita moschata (crookneck pumpkin): 111436171
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Entry
111436171 CDS
T05248
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmos03021
]
111436171
03036 Chromosome and associated proteins [BR:
cmos03036
]
111436171
Transcription machinery [BR:
cmos03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
111436171
Chromosome and associated proteins [BR:
cmos03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
111436171
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
HTH_44
Spt6_S1
HHH_9
Tex_N
HHH_3
SH2
Motif
Other DBs
NCBI-GeneID:
111436171
NCBI-ProteinID:
XP_022929650
UniProt:
A0A6J1EUY6
LinkDB
All DBs
Position
Unknown
AA seq
1612 aa
AA seq
DB search
MGKAVISDDEDEVELEDREPLDGDDVDGHNMRDEDDEDDEEDEEEQDEYEKDGFIVDDIE
EEDEEDVEEREDSDDEKQRKKKRKKKEEYVLDEDDYELLEDNNISIQRPKGSKKFKRLKK
ARRDNVEPSGFSDDEDFIESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQPEEEEDVD
IGDEDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQL
RKRELDTHEWRENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEM
SLDDEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLDIPFIAMYRKEE
ILSLLKDTEHDAGNDQDKNDKTPTLKWHKVLWAIQDLDKKWLLLQKRKKALHLYYRKRFE
EELRRDDDVTRQSLNSQLFESVKKSLEAAESEREVDDVDSKFNLHFPPGEVGVDEGQFKR
PKRKSLYSICSKAGLWEVAGKFGYSSEQFGLQLSLEKMRNDELEDPKETPEEMASNFTCA
MFESPQAVLKGARHMAAIEISCEPCVRKHVRSYFMDYAVISTNPTSDGNAAIDSFHQFSV
VKWLREKPLSRFEDAQWLLIQKAEEEKLLNVTLKLPEKHLNKLINDFNEYYLSDGVSKSA
QLWNEQRKLILQDALSGFLLPSMEKEARSVMTSKAKKWLLTEYGKNLWNKISVGPYQHKE
NDISSDEEAAPRVMACCWGPGKPATTFVMLDSAGEVLDVLYTGSLTLRSQNVNDQQRKKN
DQERVLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDGLSIVYG
DESLPRLYENSRISSDQLQGQSGIVKRAVALGRYLQNPLAMVATLCGPGREILSWKLNPF
ENFLTPDEKYGMVEQVMVDVTNQVGLDTNLAISHEWLFSPLQFIAGLGPRKAASLQRSLV
RAGSIFTRKDFVTVHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYALA
QELAKDVFDEDIKGDANDDEDAEMAIEHVRDRPHLLRTLDVDEYAKSKKWEDKRETFLDI
KRELLQGFQDWRKQYEEPNQDEEFYMISGETEDTLAEGRIVQATVRKVLGQKAICGLESG
LTGMLMKEDYADGSREISDLSERLHEGDIVTCKIKSIQKNRYQVFLVCKESEMRSNRHQI
TRNLDPYYHEDRSRLQSEQEKSQKEKELAKKHFKPRMIVHPRFQNITADEAMELLSDKDP
GESIVRPSSRGPSFLTLTLKIYDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGDDTFED
LDEVMDRYVDPLVAHLKAMLSYRKFRRGTKAEVDELMKIEKSEYPMRIVYGFGISHEHPG
TFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVA
AMVPMRSPATGGSSAASAGSPWGGSSHDGSWRSQSYDRDRSSTPGSRTGRNDNRNSSGRD
GHPSGLPRPYGGRGRGRGSYNNNRGNNERPDSSYDGSRWDSSSKDGDDGLSNFPGAKTQN
SPGKEAFPGGWSAGGSSGGGGGNGWSDSKGGGGGGWGGTGASSVGNSGGWGS
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaggcggtgatctccgatgacgaagatgaggtcgaattggaagaccgggaaccg
cttgacggtgacgatgttgacggtcacaacatgagggacgaagacgacgaagacgacgaa
gaagatgaagaagaacaggatgagtatgaaaaggatggtttcatagttgatgatattgaa
gaagaagatgaagaagatgtagaggagagggaagacagtgatgatgaaaagcagaggaag
aagaaaaggaagaaaaaggaggaatatgtgctcgatgaagatgactatgaactccttgag
gacaacaatattagcatccaacgaccaaagggcagcaaaaagtttaagaggcttaaaaaa
gctcgaagggacaatgtggagccttctgggttttcggacgatgaggattttatagaaagc
agcagaggtggacgaacggctgaggaaaaacttaaacgtagcttgtttggtgatgatgaa
gctccacttgaggatattgcggaagagttggaacaacctgaagaggaagaagatgtcgac
attggagatgaggatgaaatggctgatttcattgtagatgaagaagttgatgaagatggg
gctcccttaaggaggaggaagttgaagaaaaaaaaatccaggcaagcacccggtgtttca
tcaactgctttgcaggaggcacatgaaatttttggcgatgtcgatgagctccttcagctt
cgcaagagagaattggatactcatgagtggcgtgagaatagattagaagatgaatttgaa
ccgattgtaatttctgagaagtatatgacagaaaaagatgaccagataagggagattgat
atgcccgaaagaatgcagatttcagaagaaagtaccgggtctcctcctatggatgagatg
agtctggacgatgaagcctcatggatacatggtcatattgcaaatggaatgaactctttg
tttggcaatgccagtgggcaagacctatctgtaacaaaggatgatattctgcagtttctg
gatcttgtacatgtccaaaaattagatataccattcattgccatgtataggaaggaggag
attctaagcttgttaaaagatacagaacatgacgctggtaatgatcaggataaaaatgat
aaaacaccaactttaaagtggcataaggtactttgggcaattcaagacttggacaaaaag
tggctgcttcttcaaaagagaaaaaaggctcttcacttatattatagaaagcgatttgag
gaagagttacgcagggatgatgatgtaactagacaatcattgaatagccagctttttgag
tcagtcaagaaatctctagaggcagctgaatcagagagagaggtagatgatgttgactca
aagtttaatttgcattttcctccaggtgaagttggtgttgatgaaggacagttcaaaagg
cctaagaggaaatcactgtatagtatatgtagtaaggctggtttatgggaggttgcagga
aaatttggttatagctctgagcaattcgggttgcaactgtccttagaaaagatgagaaat
gatgagttggaggatccaaaggaaactcctgaagagatggcatcaaactttacctgtgcg
atgtttgagtctcctcaagctgtactcaagggagcaagacatatggcagctattgagatt
agttgtgaaccttgtgtaaggaagcatgtcaggagctactttatggactatgctgtgata
tccacaaatcctacgtcagatggaaatgctgcaatagattcgtttcatcaattttcagtt
gttaagtggctccgtgaaaagccattaagtagatttgaggatgcacagtggcttcttatt
cagaaggctgaagaagaaaaacttctgaatgtcactctcaagctacctgaaaagcattta
aacaagttgataaatgattttaatgaatattatctcagtgatggtgttagcaaatctgct
cagctttggaatgagcagagaaagttaatattgcaggatgcactttctggttttcttctg
ccctcaatggagaaagaagcaagatccgtgatgactagtaaagcaaagaagtggttactt
acggaatatgggaagaatttatggaataaaatatctgttggtccatatcagcacaaagaa
aatgatattagttctgatgaagaagctgccccaagggtaatggcatgctgttggggtcct
ggaaagccagctaccacctttgtgatgttagactcagcaggtgaggtgcttgatgttctt
tatactggatctctcaccctacgttctcagaatgtgaatgaccaacaaaggaagaaaaat
gatcaagagcgagttttgaagttcatgacagatcatcaaccacatgttgttgttttagga
gctgttaatttatcttgtacccgattgaaagatgatatctacgagatcatctttaagatg
gtggaggagaatcctagagatgttggacatgagatggatggattaagcattgtatacggt
gatgagtcccttcctcgtctgtatgaaaattctaggatttcctctgaccaattgcaaggg
caatcaggcattgtgaaacgtgctgttgctcttggacgttatctgcaaaatcctttggct
atggttgcgacactttgtggtccaggaagggagatcttatcttggaaactaaatcctttc
gagaattttctgaccccagatgaaaagtatgggatggttgaacaagttatggtggatgtg
accaaccaggttggcctggacactaatttggctataagccatgaatggttgttcagccca
ttgcaattcatagctggccttggacctaggaaggcagcttctttgcagagatctttggtg
agggcaggatcaattttcacacggaaggactttgttacagtacatggtcttggtaaaaag
gtatttgttaatgcagttgggttcttgcgtgttaggcggagtgggttggctgcgagcagc
agccaatttatagatttattggatgatacgagaattcatccagaatcttatgccctggcg
caagaattagcgaaagatgtttttgatgaagatattaaaggtgatgctaatgatgatgag
gatgcagagatggccatagagcatgtcagagaccgacctcatttactgagaactcttgat
gttgatgaatatgccaagagcaaaaaatgggaagataaaagagaaacttttctcgacata
aaaagagaactgttgcagggttttcaggattggcgtaagcaatatgaagagcccaatcag
gatgaagagttttacatgatatctggtgaaacagaggatacacttgcagaagggagaatt
gtgcaggccactgtccgcaaggtactaggtcaaaaagcaatttgtggacttgaatcagga
ttgactgggatgcttatgaaagaagattatgccgatggttctagagagatttctgattta
tccgaaaggttgcatgagggggatattgttacttgcaagatcaaatcaattcagaagaat
aggtatcaggttttccttgtttgcaaggagagtgagatgagaagtaatcggcaccagatt
actcgaaatcttgatccctactatcatgaagatcgaagcaggctacagagtgagcaagaa
aagtctcagaaagagaaggaactggcgaaaaagcatttcaagccaagaatgattgtacac
cctcgattccagaatataacagcagatgaagcaatggagctcttgtctgacaaggatcct
ggtgaaagtattgtccgacctagttctcgtggaccttcttttttgactttgacacttaaa
atttacgatggggtatatgctcacaaagatatagttgaaggtggaaaggagcataaagac
atcactagcttattgcgtattgggaagaccttgaaaataggggatgacacttttgaggac
ctggacgaggtgatggatcgctatgttgatcctttagttgctcacttaaaggcaatgcta
agttatcgcaagttcaggaggggcacaaaagcagaagttgatgaacttatgaagattgag
aagtcagagtatccaatgagaatagtttatggctttggaatatctcatgaacatccgggt
acattcattttgacatacatacgaagcacaaatccacaccacgagtatattggtctctat
ccaaaggggtttaaatttaggaaaagaatgtttgaagatattgataggcttgtggcctat
tttcaaaggcacatcgatgatccccagcatgattcagcaccatcaattagatcagttgct
gctatggtaccaatgcggagccctgcaactggtggctcttcagcagcatctgcaggtagc
ccttggggtggttcatcacatgatggtagctggagaagccagtcatatgatagggatcgt
tcttctactcctgggtctagaacagggagaaatgacaacagaaattccagtggtcgtgat
ggacatccaagtggtctgcctagaccatacggtggacgtgggcgtggtcgaggctcatac
aataataatagagggaataatgagagaccagattctagttatgatggctccagatgggat
tcatcttcaaaggatggggatgatggattaagcaacttcccaggagctaaaactcaaaat
tcacctggaaaagaagcctttcctggtggctggagcgctggtgggagcagcgggggtggt
ggtggtaatggatggagcgacagtaaaggcggtggcggtggaggttggggtgggactggt
gcgagttcggtaggtaacagtggggggtggggttcataa
DBGET
integrated database retrieval system
