Cucurbita moschata (crookneck pumpkin): 111442920
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Entry
111442920 CDS
T05248
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03013
Nucleocytoplasmic transport
cmos03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111442920
03015 mRNA surveillance pathway
111442920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111442920
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111442920
5.6.2.5 RNA 5'-3' helicase
111442920
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111442920
mRNA cycle factors
Common to processing body (P body) and stress granule
111442920
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
UvrD-helicase
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
111442920
NCBI-ProteinID:
XP_022936284
UniProt:
A0A6J1F7V6
LinkDB
All DBs
Position
Unknown
AA seq
1268 aa
AA seq
DB search
MDSQQNNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADHT
DRGGGSDHQSDASPVSAAPGSATKGRTGGGSGNSGGNNQMVDALTAGMSGLTFEDAGDDD
NYEFGKGNFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKE
VCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLS
QWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKIEELWKTNPDASLEDLEKPGVDD
EPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRVAYFVF
PKEDNELRLVPGDELRLRYSGDAAHPAWHSVGHVIKLTAQEEVALELRASQGVPVDIVHG
FSVDFVWKSTSFDRMQGALKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGL
PELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD
QLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSERSELHKLQQLKDEQGE
LSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPEC
LIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHP
SLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLN
RTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASV
DSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWN
SLLTHYKEHECLVEGPLNNLKQSMIQFQKPKKIYNDRRLFFAGGPGVVPNDNFGPVAPSG
SNADRRSGRGRGSYFPPHLPNGAQKPGVHASGYPMPRVPIPSFHGGPPQPYAIPTRGAVH
GPVGAVPHVPQPGSRGFGAGRGNAGAPIGSQLPNQQASQQNIGNIGSTFNFPGLESPNSQ
PSVGGPLSQLGFVNNMPVQPPNQTFLEGYSMGGISQDFLGDDFKSQGSHVPYNVTDFSTQ
ASQTGYAIDYVSQGAQGGFPGSFLNQNSQSGYSRFGTGNDFMSQDYMNHGSQGLFTQVGF
SDPSLDEASQSHYNVANANPLQSQQGMMNSLYSQPFAHYNTQPSTVQAPPQLPQQGQSSQ
NQKIHFSG
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcagcagaacaatttgtttgaaacggcatctcaacctgacacgggaaatgac
gcctacacatttcttgagttcaatacacagggggaagacttcgattatccagaatttcgt
gacccaattaggtcccctgtagcgtggccgactccttccgattcgttagccgatcatacg
gaccgcggtggggggtcggaccaccagtctgatgcgtctccggtttcggctgcgccggga
agtgctacgaaaggccggactggaggtggttccgggaatagtggtggtaataatcaaatg
gttgacgcattgacggccgggatgagtgggttgacgtttgaggatgctggagatgatgat
aattatgagtttgggaaggggaatttcacggagcatgcttgtaggtattgtggggtttcg
aacccagcttgcgttgtgaggtgtaacgtaccgtcgtgccgtaaatggttctgtaattcg
cgagggaacacgtctgggtcgcatatcgtgaatcatctggtccgggctaaacataaggaa
gtttgtcttcataaagacagtcctctgggagaaacaattcttgagtgttacaattgtgga
tgtcgaaatgttttcctccttggatttatctctgcaaagacagaaagtgtggttgttcta
ctttgtagggaaccttgcttaagtgtaaatgctctgaaggatatgaattgggacttgagt
caatggtgccctctaattgatgataggtgcttcttgcagtggctggttaagattccttct
gagcaagagcagttgagggcacgccaaattagtgcacaacaaataaataagattgaggag
ctttggaagacaaacccagatgcgtcacttgaagatcttgaaaaacctggtgtggatgat
gaaccacagcctgtagcattgaaatatgaggatgcatatcagtatcaaaatgtatttgca
cctcttatcaagctggaagccgactatgataagatgatgaaagaatctcaaagcaaggat
aatgtcaccgtacgctgggacattggccttaacaagaagagggtagcctattttgtcttt
ccaaaggaggataatgagttgcgtcttgtacctggagatgaattgaggttacgttattct
ggtgatgcagctcatccagcctggcattctgtgggacatgtgatcaagctaactgcacag
gaagaggttgcacttgagcttcgtgctagtcagggggttccagttgacatcgtccatggt
tttagtgttgattttgtgtggaagagtacaagctttgaccgaatgcagggagctttgaag
acatttgcagttgatgagaccagtgttagtggttatatctaccatcacttattaggacat
gaagtggaagtccagatggttcgcaatacacttcctcgtcgttttggtgctcctggtctc
ccggagctcaatgcatcccaagtttttgctgtaaaaagtgttctccagaagccaataagc
ttgattcagggtcctccgggtactgggaaaactgtaacttctgctgccatagtgtatcat
atggccaaacaaggccaagggcaggttctggtctgtgcgcccagtaatgtggctgtggac
cagctggcagagaagataagtgcaactgggttgaaggttgttagactatgcgcaaaatca
agagaagctgtaagttctcctgtggaacacttgacccttcactatcaggttcgacatctt
gacacatctgaaagaagtgaacttcataagttgcaacaattgaaagatgaacaaggagag
ttgtctagcagtgatgagaaaaaatataaagcccttaagagagctacagagagggaaatt
tcacagagcgcagacgttatttgttgcacatgtgttggtgctggagatcctcgcttgtca
aattttagatttcgtcaggttcttattgatgagtcaactcaggcaacagaacctgaatgt
ctcattcctcttgttcttggagcaaagcaggctgttcttgttggtgaccattgccaactg
ggacctgttattatgtgcaaaaaagcagcacgtgcaggactggcccaatccctttttgag
cgtctcgttcttcttggtgtgaaaccaattaggttgcaggttcaatatcggatgcatcca
tcactttctgagtttccttctaatagcttctatgagggcacgctacaaaacggagttacc
atcaacgaaaggcaatcgacaggcattgacttcccatggccagttcccaaccgtccaatg
ttcttctacgtccagatgggacaagaggagataagtgccagtggaacttcctacctaaat
agaactgaggcagcaaatgtagaaaaaattgtgactactttcttaaggagtggtgtagtc
cctagtcagattggagttatcacaccgtatgagggacaaagagcatacattgtgaactac
atgtcaagaaatggtgctctcagacagcaactttacaaagaaattgaggttgcaagcgtg
gattcatttcaaggaagggaaaaagattacatcatattgtcatgcgtgaggagtaatgaa
catcagggcattggattccttaacgatcctcgcagactcaatgtggctttaacacgagct
cgatatggtattgtcattcttggaaacccaaaggttttgagtaaacaaccactgtggaat
agcttattaacacattacaaggaacatgagtgcttggttgagggtcctctgaataactta
aaacaaagcatgattcagtttcagaagcctaaaaagatatacaatgatcgccgtcttttc
tttgctggtgggcctggagttgtgcccaatgataattttggacctgttgccccatctggc
tctaatgctgatagaagaagtggtcgtggtagaggttcgtactttcctcctcacctgccc
aatggagcccaaaagcctggagtgcatgcttctggttatcccatgccacgagttcccatc
ccttcatttcatggtggtcctccgcagccatatgcaatcccaactcgtggagctgtgcat
ggaccagttggtgctgttcctcatgttcctcaaccaggaagtaggggttttggggcagga
cggggaaatgcgggtgctcctattggtagccagcttccaaatcagcaagcctctcaacaa
aatattggaaatattggttccacttttaactttcctggtttggagagtcccaatagccaa
ccatcagtgggtggtccattgtctcaacttggctttgttaacaatatgcctgttcagcca
cctaaccagacttttcttgaggggtactccatgggaggaatttctcaggacttcttgggt
gatgactttaaaagccagggatcgcatgttccatataatgttactgatttctccacacag
gcctctcaaactggatatgccattgattatgttagtcaaggagcacagggtggctttcca
gggagcttcctgaatcagaattctcaatctggatattcccgttttggaacaggaaacgat
ttcatgtcacaggattacatgaatcatggttcacaaggtctattcacgcaagttggtttt
agtgatccttcactagatgaagcctctcaaagtcactataacgtggccaatgcaaatcca
ctacaatcccagcaggggatgatgaactctctctactcccagccctttgcacattacaac
acacagccctctaccgtgcaggccccaccacagctgcctcagcagggccagagctctcaa
aatcagaaaattcactttagtggttga
DBGET
integrated database retrieval system
