Cucurbita moschata (crookneck pumpkin): 111446153
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Entry
111446153 CDS
T05248
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111446153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cmos03036
]
111446153
Chromosome and associated proteins [BR:
cmos03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
111446153
Chromatin remodeling factors
NuRD complex
111446153
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDII_SANT-like
DUF1087
Chromo
Helicase_C
ResIII
HDA2-3
PHD
CHDCT2
PHD_4
DEAD
Myb_DNA-binding
zf-HC5HC2H
SLIDE
C1_2
C1_1
Motif
Other DBs
NCBI-GeneID:
111446153
NCBI-ProteinID:
XP_022940612
UniProt:
A0A6J1FK38
LinkDB
All DBs
Position
Unknown
AA seq
1483 aa
AA seq
DB search
MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDKKEDACQACGES
ENLLSCETCTYAYHPKCLVPPLKSPVPSNWRCPECVSPLSDIDKLLDCEMRPTLAEDSDA
TKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFIRAFKTHPRLKTKVNNFHKQMASNNNA
EEDYVAIRPEWTTVDRILACRENDEEKEYLVKYKELSYDECYWEFESDISAFQPEIDKFH
KIQSRSRKSSNKNKSIHGDVGEVKKKQKEFQQYDCSPEFLSGGTLHPYQLEGLNFLRFSW
SKQTHVILADEMGLGKTIQSIAFLASLYEENLSPHLVVAPLSTLRNWEREFATWAPHMNV
VMYVGSAQARAVIREYEFFFPKNHKKVKKKKSGLIITESKQDRIKFDVLLTSYEMINFDV
ATLKPIRWQSLIIDEGHRLKNKDSKLFSSLKQFSSNHRVLLTGTPLQNNLDELFMLMHFL
DAGKFGSLEEFQEEFRDINQEEQILRLHKMLAPHLLRRVKKDVMKDLPPKKELILRVELS
SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHAYMLEGVEPDIDDAEEAYK
QLLETSGKLHLLDKMMVRLKEQGHRVLIYSQFQHMLDLLEDYCCYKKWHYERIDGKVCGA
ERQIRIDRFNAKGSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL
GQTNKVMIYRLVTRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKEL
FADENDEAGKSRQIHYDDAAIERLLDRDQIRDEEATMDDEEDDEFLKAFKVANFEYIDEV
EAAAEEAAKRASMENKPVASNLERASYWEELLKDKYEVHKVEEFNALGKGKRSRKQMVSV
EEDDLAGLEDVSSEGEDDNYEADLTDGEANSTGIPSVKKPYRRKSRVDSTEPLPLMEGEG
RAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFNSRMKQKTYEEIKEYGTLFLSHIAEDI
TDSPNFSDGVPKEGLRIQDVLIRIAVILLIRDKAKFVPENPNAPLFTDDILSRYPGLKGG
KHWKEEHDRLLLLAVLKHGYGRWQAIIDDKDLKIQEVICLELNLPVVNLPVPGQTGLLVQ
NGGNTSNTEATGSESREKENGGGNDAASDVQGAGTDTANQSQLYQDSSIYYHFRDMQRRQ
VEFVKKRVLLLEKGLNAEYQKEYFGDTKANEMTSEDIENESKVSNVPGPSSMETDTQKKD
QLPQVEPISSEETSTACDDNPDRLELSQLYNEMCKVLDENCKELVHAPSGSHHAASDLKN
NLLPLEKIFEDVDRILSSQSNPVNEQPTSVSDPQPVVVESPSTDLGLKPSLADPDSEKDA
VVTEMEIDPAKDSESKKESDRLMPIDLDLIDEKPEPSTQVEIPESSARVPASDDPCPDQP
DSTPQPEKRSVVDEMEVEAEASKDIASPEYNEEGNPQVIVLDD
NT seq
4452 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcctggttgagaggcttcgtgttagatcagaacggaggccagtgtataatctc
gatgagtcagatgacgatttcgattataagcataaaaaacctggctcaacgcaggataaa
tttgaaaaactagagcgggaagacaagaaagaagatgcatgtcaagcttgtggagaaagt
gagaatcttctctcttgtgaaacctgtacatatgcttaccatcctaaatgtctagttcca
cccttgaaatcgcctgtccctagcaactggaggtgccctgaatgtgtaagccccctaagt
gatatcgataagttattggactgtgaaatgcgccctactcttgctgaagatagtgatgca
acaaagctcggttcaaagcaaatatttgtgaaacaatacctcgtaaagtggaaggggtta
tcttatctacactgcacatgggtgcctgagaaagaatttattagagcttttaaaactcat
cctcgcttgaagactaaagtaaacaattttcataagcaaatggcatcaaacaacaatgcc
gaggaggattatgttgctattcgacctgaatggactacagtggaccggattcttgcttgc
agggaaaacgatgaagaaaaagagtatttggtgaaatataaagaactttcatatgatgaa
tgctattgggaatttgaatcggacatctctgcctttcagcccgaaatcgacaaattccat
aaaattcagtctagatcccgcaagtcttctaataagaacaaaagcatccatggtgatgtt
ggtgaagtaaagaaaaaacaaaaagaattccaacaatatgattgtagtcctgaatttctt
tctggaggaacattacatccatatcagctcgaagggttaaatttcttgcgtttttcttgg
tccaagcaaactcatgtgatacttgctgatgagatggggctcggaaaaaccatacagagt
attgcctttttagcatccctttatgaagagaatttatctcctcacttggtggttgctcca
ttatcgacgcttcgaaattgggagcgtgaatttgctacatgggctccacatatgaatgtt
gttatgtatgtgggctctgcgcaagctcgtgcagttataagggaatatgaatttttcttt
ccaaagaatcataagaaagtgaagaaaaagaaatctggcctaattattactgaaagtaag
caagatagaatcaagtttgatgttctgctgacgtcatatgagatgattaactttgatgtg
gcaacactgaagcctataagatggcaatccttgattattgatgaaggccatcgacttaag
aacaaggattcaaaattattttcttcattgaaacaattttcaagtaaccatcgagtactc
ttgactggaactcctcttcagaataatctcgatgaacttttcatgctgatgcacttcctt
gacgctgggaagtttggaagtcttgaggagtttcaagaggagttcagagatatcaatcaa
gaggagcaaatcttgaggctacacaaaatgttagctcctcatctcctgagaagggtcaag
aaagatgtcatgaaggacctaccccctaagaaagaacttattttgcgtgttgaattaagc
agtaagcagaaagaatattacaaagccattttaacccgaaactatcaaatattaactcgc
cgtggtggtgcacagatttctcttatcaatgtcgttatggaattgcggaagctctgttgt
catgcttacatgttagaaggagttgaaccagatatagacgatgctgaagaagcgtataaa
cagcttttggaaacttccgggaagttgcatttgctggataagatgatggtgagacttaaa
gaacaaggtcatagagttctcatatattcacagtttcaacacatgttggacttgctagaa
gactattgctgttacaagaaatggcactatgaaagaattgatggcaaggtttgtggagct
gaaagacaaattcgaatagatcgattcaatgccaagggttcctccagattttgttttctg
ctttctactcgagctgggggtctgggaataaatcttgcaactgctgacaccgttatcata
tatgacagtgattggaatccccatgctgatctacaggctatggctagagctcaccgactt
gggcaaactaacaaggtaatgatttatcggttagtaacacgagggaccattgaagaaagg
atgatgcaaatgacaaagaagaagatggttttagagcatttagtcgtcggaaggctgaag
gctcagaacatcaatcaggaagagctagatgatattataaggtatggctcaaaggaatta
tttgctgatgagaatgatgaggcagggaaatctcgtcaaattcattatgatgatgctgcg
atagaaagattgctggatcgtgatcaaattagagacgaagaagcaaccatggatgacgaa
gaggatgatgaatttctgaaggcctttaaggtggcaaattttgagtatatcgacgaggta
gaagctgcagcagaagaggcagccaaaagggcatccatggaaaataagcctgttgcaagc
aacttggaaagagctagctattgggaagagttgttgaaggacaaatatgaagtgcataag
gtagaagagtttaatgctttgggtaaaggaaagaggagccggaaacagatggtatctgtt
gaagaagacgacctcgctggactagaagatgtaagctccgagggtgaggatgataactat
gaagctgatttgactgacggtgaagcaaattcaactggtattccttctgtgaaaaagcct
tatcggaggaaatctcgcgtggatagcactgagccacttcccttaatggaaggggaagga
agagcattcagagttcttggtttcaaccaaaatcaaagggctgcatttgtgcaaatttta
atgaggtttggcgtcggggactttgactggaaggagtttaattctcgtatgaagcagaag
acttatgaagaaataaaggaatatgggactcttttcttatctcacattgctgaagatatc
actgactcccccaacttttcggatggtgttcctaaagaaggactcagaatacaagatgtg
ctgatcagaattgcagttatactcttgataagggataaagcaaaatttgtcccagaaaat
ccgaatgctccacttttcacagacgacattttatctcgttaccccggacttaaaggtgga
aaacattggaaggaagaacatgatagattgttgttacttgctgttctgaagcatggctac
ggtagatggcaagcgattattgacgataaggacctcaagattcaagaggtgatttgtctg
gagttgaatcttcctgtcgttaacctacctgttcccggacaaaccggtttgcttgttcag
aatggtggaaacacatcaaatactgaagcaactggtagcgagtccagagaaaaggaaaac
ggcggtggaaacgatgctgcctctgatgtgcagggagcaggaactgatactgctaaccaa
tcccagttatatcaagattcgtctatatattatcattttagagatatgcagagacgacag
gttgaattcgtcaagaaaagggtgctcctcttggaaaaagggctgaatgcagagtaccag
aaagaatactttggcgatacaaaggcaaatgaaatgacaagtgaagatattgagaatgaa
tccaaggtttcgaatgtgccaggtcctagctctatggagactgatactcaaaagaaggat
cagttgcctcaagtagaaccaatttcttcagaagaaacttctactgcatgtgatgacaat
cctgatagattagaattaagtcagctttacaatgagatgtgcaaggttttggatgaaaat
tgcaaagagctggtccatgcaccctctgggagccaccatgcagcttctgacttgaaaaat
aacctcctccccttagagaagatttttgaagacgtggaccgaattctttcttcacagtca
aaccccgttaacgaacaaccaacgtcagtttctgatccacaacccgttgtcgttgaatca
ccgagcaccgatttgggtcttaaaccatcacttgcagatccagacagtgaaaaggatgct
gttgtcacagaaatggagatagatcctgcaaaagattcagaatcgaaaaaagaaagcgac
aggttgatgccaatagaccttgatctcatcgacgagaagcctgaaccatctactcaagta
gaaattcccgaatcatctgctcgtgttccagcttctgatgatccatgcccagatcagcca
gattctacacctcaaccagagaaacgtagcgttgttgatgaaatggaagttgaagctgaa
gcgagcaaggacatcgcctcaccagaatataacgaggaaggtaacccgcaggtgatcgtg
ttagatgattag
DBGET
integrated database retrieval system
