Cucurbita moschata (crookneck pumpkin): 111448471 Help Entry 111448471         CDS       T05248                                  Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism cmos  Cucurbita moschata (crookneck pumpkin) Pathway cmos03030   DNA replication cmos03410   Base excision repair cmos03420   Nucleotide excision repair cmos03430   Mismatch repair Brite KEGG Orthology (KO) [BR:cmos00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     111448471    03410 Base excision repair     111448471    03420 Nucleotide excision repair     111448471    03430 Mismatch repair     111448471  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:cmos03032]     111448471    03400 DNA repair and recombination proteins [BR:cmos03400]     111448471 Enzymes [BR:cmos01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      111448471     6.5.1.6  DNA ligase (ATP or NAD+)      111448471     6.5.1.7  DNA ligase (ATP, ADP or GTP)      111448471 DNA replication proteins [BR:cmos03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     111448471  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      111448471 DNA repair and recombination proteins [BR:cmos03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      111448471    NER (nucleotide excision repair)     Other NER factors      111448471    MMR (mismatch excision repair)     Other MMR factors      111448471 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-GeneID:  111448471 NCBI-ProteinID:  XP_022943872 UniProt:  A0A6J1FU87 LinkDB All DBs Position Unknown AA seq 804 aa AA seqDB search MLSLRSCYCLRPITLPHPQFKKLIFSNKPPPFKPIFQNFVSAMSSRPSAFDALMSGARAA AKKKPVNSSPKKRKALDSLGPPPKPNSSLALESTPPVESQCGSSTSTLDNHGDPNPVKSE EAVDLGETKLRQDDGGNFGGKIGPVANKKCASSVQERTAKLKSSIPELKKKAKDFNSKTF ACWNEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKI APAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDA LTITKVFDSFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQT LLAALGQAAVYAEKHSTPPANVQSPLEEGAKIVKQVYSVLPVYDKLVPALLNGGVWNLSK TCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRN AERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSD IKVEVCVFAFDLLYLDGQPLIHKELSVRREHLYDSFIEEAGYFQFATAITTSDLEEIQKF LDASVDQSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGK RTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTI NPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSNKGISLRFPRLVRVRKDKTPEEATLS EQVADMYNAQKLNHQNNQDDNDED NT seq 2415 nt NT seq  +upstreamnt  +downstreamnt atgctttctctgcgttcatgctactgtttacgccccattacattgcctcatccccaattc aagaaactcatcttctccaacaaacctccccctttcaaacccatttttcagaattttgtt tcagcaatgtcttctcgtccttctgctttcgatgctctcatgtccggtgctcgggccgct gccaagaagaagcctgtaaattcttctcccaagaagcgtaaagccctagattctttaggc cctcctccgaaacctaactcttccctggctttggagtcaacgccgcctgttgaatcgcag tgcggtagttcaacctcaactttggataatcatggagatcctaatccggttaagtccgag gaagctgtagatttgggggaaaccaagttgcgtcaggatgatggtgggaattttggaggc aagattgggccggttgcgaataagaagtgcgcgtctagtgttcaagaaagaactgcgaaa ttgaagagctctatcccagagttgaaaaagaaggccaaggatttcaactcgaaaacattt gcatgttggaatgagggcgaacgggttccatttttgtttctgtgtttggggtttgatatg atttcggaggagtctagtaggattactatcaccgatatcgtctgcaacatgttgaggacc gtcatggatactacacccgacgacttggtagccactgtgtatcttttggcgaataagatt gctcccgcgcacgaagggctcgagttgggtattggggatgcttctattatcaaagctctt tctgaggcatttgggaggacagaggcacaggttaaaaaacagtacaaggaattgggagat ttaggtcttgttgccaaagcgagccgttcgtcacaatccatgatgcgaaagcctgatgct ttaactattaccaaagtatttgactcatttcggctgatcgctaaggaatctggcaaggat agtcaggagaagaaaaagaaccatatcaagtcactgcttgttgctgccactgactgcgaa cctttgtatctgattagattgctgcagacaaaattgcgaattggacttgctgagcagact cttttagctgcattagggcaagcagctgtatatgctgaaaaacattcaacacccccagcg aacgttcaatctcctctagaagagggtgctaagattgtaaagcaggtgtattctgtgctc cctgtttatgataaacttgtccctgcgcttcttaatggtggtgtgtggaacctttcaaaa acatgcaactttacaccgggaattccaattggacctatgttggcaaaaccaacaaaggga gtctccgagatcttaaataaattccagggtttggaatttacttgtgaatacaaatatgat ggggaacgtgcccagattcattacatggaagatggttcagttgagatctacagtcgaaat gctgaacggaacactggaaagttccctgatgttgttctcacggtatcaaggataaagaaa ccatctgtaagatcgtttattttggattgtgaacttgttgcttatgatcgtggaaaacag aagattttgccttttcagattctgagtacacgagctcgcaagaacgtggccgtgagcgat attaaggttgaagtgtgtgtatttgcttttgatttactgtatctcgatggtcaaccactt attcataaagaacttagcgttcgtcgagagcatctctatgattcatttattgaagaagct ggatattttcaatttgccacagcaataacaacaagcgatcttgaggaaatacaaaaattc cttgatgcatctgttgatcaaagttgtgagggtttaatcatcaaaacattgaaccgggat gctacttacgagccttccaagaggtcacttaactggctaaaactgaagaaggattacata gacaacataggggattcacttgatctggtaccaattgctgctttccatggccgtgggaag cgtacaggtgtctatggcgcatttctccttgcctgttatgacaatgacaatgaagaattt caaagcatttgtaagattggaactggtttttctgaagcaatgcttgaggaacgttctgct agtctccgttctaaagtcattccagaaccaaagtcatattatcggtatggagatacaatc aatccagatgtttggtttgaacctactgaggtttgggaggttaaagcggcagacttgact atcagcccagttcatcgtgcaggagtcggcatcgtggattccaacaagggaatttctctt cggtttccacgtcttgttcgtgtaaggaaagacaaaactccagaggaggccacattgtct gagcaggttgccgacatgtataatgctcagaaactcaaccaccaaaacaatcaagatgac aatgatgaagactga

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