Cucurbita moschata (crookneck pumpkin): 111452331
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Entry
111452331 CDS
T05248
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03013
Nucleocytoplasmic transport
cmos03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111452331
03015 mRNA surveillance pathway
111452331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111452331
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111452331
mRNA cycle factors
P-body specific factors
111452331
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
111452331
NCBI-ProteinID:
XP_022948756
UniProt:
A0A6J1GA31
LinkDB
All DBs
Position
Unknown
AA seq
513 aa
AA seq
DB search
MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI
GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS
MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS
EGDGKRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV
SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKD
DGSLNPNEGKPSRRGVAGGHEKQVWVQKSSSGS
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccgttggagaggaccaaagtagtgattaggcacttgcccccttctctccct
cactcagatctcttccaccatattcatgatcgcttcgccggtcgctacaattcctgttac
tatcgtcccggaaagaccagtcagaaggagcagaggtacgctcgagcctacatagatttt
accatacctgaagatgtttttgagtttgcggagttttttgatggccatgttttcgtcaat
gagaagggtgctcagtataaggctgtagttgaatacgcaccttcacagcgtgttccgagg
tcatcttctaagaaggatggtcgtgaggggactatatacaaagatccagattatttggag
tttttaaaactcattgccaagcctgctgagcatcttccaagtgcagaaatacagttggaa
agaaaagaagcagagcaatctggtgttgcaaaagatactccaattgttacccctctcatg
gagtttgttcgccagaaacgagcagttgaaagtggaactcagggttcttcagtgcctcgg
aaggttaaaagaggtgttgcagcatcctctagaaaacatgagtcgaattccatgaagcga
gggatggagaagaagaagtatattttgaaggacagtgggaagaacacgaaccgcagagac
aagtcaaatttcattttggtgccgaggcgagaggatcagtcagccacttcaagtggaatt
ggaatttctgacgttggtacagccgactctggaaagaaaaaaattctgcttctcaaaggg
aaagggcgagacgtatctcatattgctgatggcatgttacagtttcagagcgcgacatct
tctgggaattctcctgctaatgctacaaaacagaatcagaggcgtgaggctggtggaagc
atgatcagaagcattcttttaaataatgatgcacgtcatggacagagttcatcagtagcc
cagtctcaccaaaaaattcagatcctgaactcagacaatgggaagcgaccacctcgtccc
attaattctcgatctgggtctaatgatatgtccagtaatgatccaaatccatctggttca
gaaggggatggaaaaagggctatggaaaataagtttaacaaaaaggaacatcatggcctg
ggtaatgctagtgagaagcaagaaaaacgaattagaaacaaagatagacctgatcgtggg
gtttgggcaccacgtggtcgttcagatgcctcagtctcacaacttgatgaatcctctgtt
tcacaatctactcatttgctttctgactcggttgaagcataccgtggggaaatgaaagat
gatgttcatggaagcaggactggggatgttacaaccactgtgagtggacgtagcagttca
gtggagaatggttcggttagacatgttgggcgtcgtggggctgtccatattatgaaggat
gatggatctttgaacccaaatgaaggaaaaccatccagaagaggtgttgccggtggccat
gagaaacaagtatgggttcagaagtcatcttcaggttcttaa
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