Chamaesiphon minutus: Cha6605_3074
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Entry
Cha6605_3074 CDS
T02414
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cmp
Chamaesiphon minutus
Pathway
cmp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cha6605_3074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmp03400
]
Cha6605_3074
Enzymes [BR:
cmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cha6605_3074
DNA repair and recombination proteins [BR:
cmp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cha6605_3074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AFY94097
UniProt:
K9UG52
LinkDB
All DBs
Position
complement(3228052..3231465)
Genome browser
AA seq
1137 aa
AA seq
DB search
MAFSALIRTLERSQLSAELLSKLQQQGLLHLAGLPRLPKGLVASALAQASQQHLVVVTAT
VEEGGRWAAQLEAMGWKSVHFYPTTESSPYGDASLESEMIWGQMQGLAEVQALGGALEDG
ETGGVGDGGTGRRSGVAIVCTTLALQPHLPSPAEFAVRCLTLRVGDEGDVERLGTQLVHL
GYERVPLVETEGQWSRRGDIIDIFPVAAELPVRLEWFGDELDKLREFDPSTQRSLDKIES
LVLTPVNFGTIFGEDNTQSRYSLLDYLPDNCVVAIDEFDRAQAHNDRWFEYIQEEWETLP
EGTPVRHQQFGVSVAKIAARFRYLKLDELAVSGEGLNLSCRAIPTIPHQFAKIAETLRGY
HKQSYSSWLVSAQPSRSVSLLQEHDCPAQFVPNPRDFPAIDKLQIQHTAVAIKYSGMAEL
EGFILPTFRMVVVTDREFFGQQSLASFSYVRKRRQAASKQVDPNKLRPGDYVVHRNHGLG
RFIKFESIQTDDTLRDYLTIQYADGSLKVPADQVGVLSRFRQAAGAKPELNRLSGQAWEK
TKAKVKKSIKKLAFDLLKLYAERSQKEGFAFPPDAPWQQELEDSFRYQPTPDQLKATQDV
KRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTTANKQVIFLAPTTILTQQHYHTLKE
RFAPYPINIGLLNRFRTAEERKDILQRLKTGELDIVIGTHQLLSKELKFKDLGLLTIDEE
QRFGVNQKEKIKTLKSQIDVLTLSATPIPRTLYMSLSGVREMSLITTPPPSRRPIATHLS
PYKIDAIATAIRQELDRGGQIFYVVPKIEGIEETAGKIREQIPSCRIAIAHGQMDEAELE
STMLTFSNGDADLLVCTTIIESGLDIPRVNTILVEDAHRFGLAQLYQLRGRVGRAGIQAH
AWLFYPKESTLSETARQRLKAIQEFTQLGSGYQLATRDMEIRGVGNLLGAEQSGQMDVIG
FDLYMEMLQEAIKEIRGQEIPQVDDTQIDLKVTAMIPADYIADLEQKMSAYRAVAAADTK
QELTNIAAEWHDRYGEIPKPAQQLFRIVELKQIAKQLGFSRIRPDGKQHVILETPMAEPA
WNLLAEYIPDNARSRYVYSTGKVTARGLGVLRPNEQVEMLIDVLSKMQGVLMAASSS
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggctttttctgcactgattcgcaccctcgaacgctctcaactttcagcagaactgctc
tccaagctccaacaacaggggctgttgcatttggctgggttgccacgtttgcccaaaggt
ttggtggcttcggctctagcgcaagcatcgcagcaacatctagtagtagtgacggcgacg
gtggaagaaggaggtcgctgggcggctcaattagaggcgatgggctggaagtcggtacat
ttctatcctacgactgaatcgtcgccctacggggatgctagcctcgaatcggagatgatt
tgggggcagatgcaggggttggctgaggtgcaggctttgggtggagcgttagaggacggg
gagacggggggagtaggagacggggggactgggagaagatctggagtagcgatcgtgtgt
acgacgttggctttacagccacatttgccttcgccagccgagtttgcagtgcgatgtttg
acgttgcgggtgggggatgagggcgatgtggagcggctgggtactcagttggtgcatctg
ggctacgagcgggtgcctttggtagaaacggagggacaatggagtcggcggggagatatt
atcgatattttcccagtagcggcggagttacccgtgcggctggagtggtttggggatgag
ttagataagttgcgagagttcgatccgagtacgcaacgttcgctcgataaaattgagagt
ttggtattgactccggtgaattttgggacgatttttggggaagataatacgcaatcgcgg
tactctttattagattatctacccgataattgtgtggtagcgatcgatgaattcgatcgc
gctcaggcgcataacgatcgctggtttgagtatattcaagaggagtgggagactttaccg
gaggggacaccagttaggcatcaacagtttggtgtgagcgtcgccaagattgccgcaaga
tttaggtacttaaaattagacgaattagccgtcagtggtgaaggtttgaatttatcttgt
cgggcgattccgacgattccccatcagtttgccaagattgccgaaactttacgcggctat
cacaaacaaagttattcgagctggctggtatcggcacaaccttcgcgatcggtatcgtta
ttacaagaacacgattgtcccgcccaattcgttcccaatccgcgcgactttcccgcgatc
gataagttacaaattcagcatactgcggtagcaattaaatattcgggcatggcagaatta
gaaggttttattctgccgacatttcggatggtagtagttaccgatcgtgagtttttcgga
cagcaatctttagcaagttttagctacgttcgcaagcggcgtcaggcggcatccaaacaa
gtcgatccgaataaattgcgccctggcgattatgtggtgcatcgcaatcatggtttggga
agatttattaagtttgaaagtatccagactgacgatactttgcgggactatttaacgatt
caatatgccgatggctcgctgaaagttccggcagatcaagtgggcgtactgtctagattt
aggcaagcggcaggagcaaaaccagaactaaatagattatctggacaagcttgggaaaag
accaaagcaaaagtcaagaagtcaattaaaaagttagcattcgacttactcaaactctat
gccgagcgatcgcaaaaagagggctttgcctttccacccgatgccccatggcaacaagaa
ctagaagactcgttccgctatcaaccgacacccgatcagttaaaagcaactcaagatgtc
aagcgcgatatggaaagcgatcgaccgatggatcgtttagtgtgtggggatgtgggattt
ggtaaaactgaagttgcaattcgggcgatatttaaagccgtcactactgctaataagcag
gttatttttctggcaccgacgacaattttaactcagcaacattaccatacgctcaaagaa
agatttgcaccctatcccattaacatcggactgctaaatcgctttcggacggctgaggag
cgcaaggatattttacaacgcctcaaaactggcgaactagatatcgtgatcgggacgcat
caacttttgagtaaagagttaaaattcaaagatttgggtttattaacaatcgatgaagaa
caacgatttggtgtcaatcaaaaagaaaaaattaagaccctcaaaagtcaaattgatgta
ttaacactctcggctacacccattccgcgcaccctctatatgtccttatctggcgtgcgc
gaaatgagcctaattaccacgccaccaccctcgcgccgtccgatcgcaacccacttatcg
ccctacaaaattgacgcgatcgccactgccattcgtcaagaactcgatcgcggcggacag
atattttatgtagtgccaaaaatcgaaggcatcgaagaaactgctggtaaaattcgcgaa
caaattccatcttgtcggatcgcgatcgctcacggccaaatggacgaagctgaactcgaa
tcgacgatgttaacctttagtaatggcgatgccgatttactagtttgtacgaccattatc
gaatctggtttagatattccccgcgtcaacaccattctagtcgaagatgcccatcgcttt
ggattggcgcaattatatcaattgcgcggacgcgtcggacgcgccggaattcaagcccat
gcctggttattttatcccaaggaatcaaccctctccgagacagccagacagcggttaaaa
gcgattcaggagttcactcagttgggttcgggttatcaacttgccactcgcgatatggag
attcgcggcgttggtaatcttttgggtgcagaacaatcgggacagatggatgttatcggc
tttgacttatacatggaaatgttgcaagaagccatcaaagaaattcgcggccaagaaatt
ccccaagtcgatgatactcaaatcgatctcaaagtcacggcgatgattcctgccgattat
atcgccgatctggagcaaaaaatgagtgcttatcgcgctgttgctgccgccgataccaaa
caagaactcaccaatattgctgccgaatggcacgatcgttatggtgaaattcccaaacca
gctcaacaattattccgcatcgtcgaactcaaacaaattgccaaacaactcggctttagt
cggattcgtcctgatggtaaacaacacgttattttagagacaccaatggcagaaccagcc
tggaatttactggctgaatacattcctgacaatgctcgatcgcgttatgtttatagtacg
ggtaaagtgacagcaagaggtttaggcgtgttgcgtccgaacgagcaggtggagatgtta
attgatgtgttgagcaagatgcaaggggtattgatggctgctagttcgagttaa
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