Cyclobacterium marinum: Cycma_3040
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Entry
Cycma_3040 CDS
T01592
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
cmr
Cyclobacterium marinum
Pathway
cmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cycma_3040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmr03019
]
Cycma_3040
03110 Chaperones and folding catalysts [BR:
cmr03110
]
Cycma_3040
03029 Mitochondrial biogenesis [BR:
cmr03029
]
Cycma_3040
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmr04147
]
Cycma_3040
Enzymes [BR:
cmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Cycma_3040
Messenger RNA biogenesis [BR:
cmr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Cycma_3040
Chaperones and folding catalysts [BR:
cmr03110
]
Heat shock proteins
HSP60 / Chaperonin
Cycma_3040
Mitochondrial biogenesis [BR:
cmr03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Cycma_3040
Exosome [BR:
cmr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Cycma_3040
Exosomal proteins of other body fluids (saliva and urine)
Cycma_3040
Exosomal proteins of breast cancer cells
Cycma_3040
Exosomal proteins of colorectal cancer cells
Cycma_3040
Exosomal proteins of bladder cancer cells
Cycma_3040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
divDNAB
EAD9
Pho88
Motif
Other DBs
NCBI-ProteinID:
AEL26768
UniProt:
G0J584
LinkDB
All DBs
Position
complement(3554388..3556016)
Genome browser
AA seq
542 aa
AA seq
DB search
MAKELFFNTDARDRLKKGVDALADAVKVTLGPKGRNVILDKKFGAPSITKDGVTVAKEIE
LEDAIENMGAQLVKEVASKTADDAGDGTTTATVLTQSIFSVGIKNVAAGANPMDLKRGID
KAVEAIVAELRAASKEISTSKEIAQVGTISANNDSEIGEMIADAMQKVGKDGVITVEEAK
GTETEVRTVEGMQFDRGYLSPYFTTNTEKMEAELENPYILIYDKKISAMKELLPVLEPVA
QSGRPLLIIAEDVDGEALATLVVNKIRGALKVAAVKAPGFGDRRKAMLEDIATLTGGTVI
SEERGYKLENVTIDYLGTAEKVNIDKDNTTVVNGAGEKSAIEARINEIKSQIEKTTSDYD
REKLQERLAKLSGGVAILYIGAATEVEMKEKKDRVDDALHATRAAVQEGVVVGGGVALIR
ASVVLENLKGLNEDEDTGINIIKQAVEAPLRTIVSNSGGEGSVVINKIKDSKGDFGYNAR
TDSYEDLLKAGVIDPTKVTRLALENAASIAALLLTTECVVADIKEEAPAAPPMGGGGMGG
MM
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggaattatttttcaataccgacgcaagggatcgtctaaaaaaaggagttgac
gctcttgctgatgcagttaaggtaacactaggaccaaaaggcagaaatgtaattttggac
aaaaaatttggcgctccaagcattactaaagatggtgtgacagtagccaaagaaattgag
ctagaagacgctatagaaaacatgggcgctcaattggtaaaagaagtagcttctaaaact
gctgacgatgcgggtgacggtaccactactgccactgtattgacacagtcaattttttct
gtaggtatcaaaaacgtagctgcaggcgcaaatccaatggatcttaaaagaggtattgac
aaagctgtagaagcaattgttgctgagttaagagctgcctctaaagaaatctctacctct
aaagaaattgcacaagtaggtactatttctgccaacaatgactctgaaatcggtgaaatg
attgcagatgctatgcaaaaagttggtaaagatggtgtgatcactgtagaagaagctaaa
ggtactgagacagaagttagaactgttgaaggtatgcaatttgacagaggatacctttct
ccatatttcaccaccaatactgaaaaaatggaggctgaattggaaaacccatacatcctt
atttacgataagaaaatttctgcaatgaaagaattgctacctgtgttggagccagttgct
cagtcaggaagaccattgttgattatcgcagaagatgtagacggtgaagctttggctaca
ttggtagtaaacaaaattagaggtgccctgaaagttgcagctgtaaaagctccaggtttc
ggtgacagaagaaaagcaatgttagaagatattgctactcttacaggaggtaccgtgatt
tctgaagaaagaggttacaagcttgagaatgttaccattgattacctaggaactgctgag
aaagtaaacatcgacaaagacaacactactgttgttaatggtgcaggtgaaaaatcagca
attgaagctagaatcaatgagatcaaatctcaaatagaaaaaactacttctgattacgac
cgtgaaaaacttcaagaaagattagctaagctatcaggcggagttgctattctttacatt
ggtgcggccactgaagtggaaatgaaagagaaaaaagacagagttgatgatgcccttcac
gctactagagcagctgtacaagaaggtgtagttgtaggtggtggtgtagcacttatcaga
gcgtctgtagtccttgaaaatctaaaaggtcttaatgaagatgaagataccggtatcaac
atcatcaaacaggctgttgaggctccacttagaacaatcgtttctaactcaggtggtgaa
ggttctgtagttatcaataaaatcaaagattctaaaggagatttcggttacaatgcaaga
accgatagttacgaagacttattaaaagcaggtgttattgaccctactaaagtaactcgt
ctcgctttagaaaatgctgcatctattgctgcattgttattgacaaccgaatgtgtggta
gcagacattaaagaagaagctccagctgctcctccaatgggtggaggaggaatgggtgga
atgatgtaa
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