Cyclobacterium marinum: Cycma_5024
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Entry
Cycma_5024 CDS
T01592
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
cmr
Cyclobacterium marinum
Pathway
cmr02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
cmr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Cycma_5024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmr03021
]
Cycma_5024
Transcription machinery [BR:
cmr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Cycma_5024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_ECF
Sigma70_r2
GerE
Sigma70_r4
HTH_40
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AEL28708
UniProt:
G0J8A8
LinkDB
All DBs
Position
complement(6121491..6122156)
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AA seq
221 aa
AA seq
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MPEPKISISSKRLLSSISLEEAKVSHSTEMMNDEQLISHALKEDPKKGMGMIFQRYYQPL
CSHAVRFVGSKEVAQDLVSDLLVHFYDQKLYLKVNTSIRSYLFQSVRNRGYNYLKHDLAR
KGELSLATEPRIPETYEPDSITEYEELYQDFEKAIETLPGQRRKIYLLFQFEGKTMKEIS
TEIGLSIRTVETQLYRSKITIRQLLRDKWLLWLITFTQLFN
NT seq
666 nt
NT seq
+upstream
nt +downstream
nt
atgccagaacccaaaatttctataagtagtaaaaggctcctttcatcgatcagtttagaa
gaagcgaaggtttcccattcaactgaaatgatgaatgatgaacagctaattagtcatgcc
cttaaagaagatcccaaaaaaggaatgggaatgatttttcaacgctattaccaaccactt
tgttcgcatgcagttcgttttgttgggtcaaaagaagttgcacaagatttggtttccgac
cttttggttcatttttatgatcaaaagctttatttgaaggtaaacacttccattcgctcc
tatttattccagtcggtaagaaatcgaggttataattatctaaagcatgatttggcacga
aagggagagttgagtctcgctacagagcccaggattcctgaaacttatgagccggatagc
attacggaatacgaagagctttaccaagattttgaaaaagccattgaaacccttcccggt
cagcgaaggaaaatttacctattgttccaatttgaagggaaaacaatgaaagaaatttct
acagaaattgggctttcgatcagaactgtagaaacacaactttatcgttctaaaattacc
attcgccagttgctaagggataaatggctgctttggttaataacgtttacccaacttttt
aattga
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