Clavibacter sepedonicus: CMS2361
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Entry
CMS2361 CDS
T00678
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cms
Clavibacter sepedonicus
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cms03019
]
CMS2361
Enzymes [BR:
cms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CMS2361
Messenger RNA biogenesis [BR:
cms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CMS2361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
ResIII
nSTAND3
AAA_30
HA2_N
T2SSE
SLFN-g3_helicase
NACHT
AAA_23
UvrD-helicase
Rv2632c-like
DUF3420
FtsK_SpoIIIE
Zeta_toxin
PhoH
Motif
Other DBs
NCBI-ProteinID:
CAQ02447
UniProt:
B0RGP0
LinkDB
All DBs
Position
2498720..2502538
Genome browser
AA seq
1272 aa
AA seq
DB search
MESSIVYPPELPVSRMRDEIADAIRDNQVVIVAGATGSGKTTQLPKICLELGRESIGHTQ
PRRLAARTISERIAEELGGEVGQLVGYQVRFTDKVSADTRIKLMTDGILLNELQRDRLLK
KYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKLIITSATIDPQSFSKHFGDAPIVEV
SGRTYPVEIRYRPLVAEAAVAGEDDDLADAPLERPADDRDFLEGINAALDELAAESSGDV
LVFLSGENEIRDAEDAIRSRNLPHTEVLPLYGRLSSADQHRVFQPSTQAGVRRRIVLATN
VAETSLTVPGIKYVIDAGTARISRYSVRSKVQRLPIEAISQASANQRSGRSGRTSDGIAI
RLYSEEDFLRRPEFTEPEILRTNLAAVILQMVSLGLGDIAAFPFLQPPDSRGIKDGVDLL
TELGAVIRSPDGTPALTQVGRDLSRLPIDPRFARMVVESRKHGVSREVMIIVAGLTIQDV
RERPLEKRPQADQQHARFVDPSSDFITLLNLWNHLEEKEAELSSSAFRRMCKAEFLNYVR
VREWKDVFRQLRQLARPLDLAMNEPKADPDGIHKSLLAGLLSHIGLKDAQKKDYVGARQS
RFVVFPGSALAKKQPDAIMSAELVETSRLFARTNAAIDPAWAEPIAGGLVKRTHSEPHWE
KKQGATVAWERVTLYGVPIVLKRRVQFSRIDPAYARELFIRHALVEGDWESQQAFDRANR
RLREELAEVEERTRRRDILNDDEAVFEFYDKRIPRDVASTRAFEGWWKKQRQETPELLTM
TAEELVASDAMDVDEAAFPPTWQQGDQRLSLTYRFEPGAPDDGVTVQVPLALLARLSPAG
FDWQVPGMRRDLVTAMIKALPKALRKNVVPAADWADRLLEGLPEPDPQHPVAFTTTIAGL
IMRKAHVRVADDDFDLDRIPAHLRMAFRVVDERGREVAAGRDLTELQARLSSRARDSVAR
ATARPVERVAGAKGPATRGMERTGLTTWDLDELPRFVDTAQGGTGDSRHVIRAYPALVDE
GSTVAIRLMATAEDQARAMPGGVRRLLVLAIANPSAYVKQHLTSQEKLMLATSPYPNVQA
LFDDCLLACIDQVLERVAPGGAIYSKELFETARDRVSGVVMDSMFDTVALVNRILTGARD
AERAIKQATSMQLIGALTDAREQLAGLVHPGFVSATGLARLQRLPAYLSGLTHRVQRLPD
QPARDRAWMTEVQKATDLYREAGGVIPSAPHAPASLVHARWMLEELRLSLFAQHLPTAEP
VSLQRIRKVLAG
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggaatccagcatcgtgtacccgcccgagctccccgtcagccggatgcgcgatgagatc
gccgacgccatccgcgacaaccaggtcgtcatcgtcgcgggcgccacgggctcgggcaag
accacgcagctgccgaagatctgcctcgagctcggccgcgagagcatcggccacacgcag
ccccgccgcctcgccgcgcgcaccatctcggagcgcatcgcggaggagctcggcggcgag
gtcggccagctcgtcggctaccaggtgcgcttcaccgacaaggtctccgccgacacccgc
atcaagctgatgaccgacgggatcctgctcaacgagctgcagcgcgaccggctgctgaag
aagtacgacacgatcatcatcgacgaggcccacgagcgcagcctcaacatcgacttcctg
ctcggctacctcaagcagctgctgccccgccggcccgacctcaagctcatcatcacgtcg
gccaccatcgacccgcagagcttctcgaagcacttcggcgacgcgcccatcgtggaggtg
tccgggcgcacgtacccggtggagatccggtaccgcccgctcgtggccgaggccgccgtc
gcgggcgaggacgacgacctcgccgacgcgccgctcgagcgcccggccgacgatcgcgac
ttcctggagggcatcaacgcggccctcgacgagctggccgccgagtcgtcgggcgacgtg
ctcgtcttcctcagcggcgagaacgagatccgcgacgccgaggacgcgatccgcagccgg
aacctcccgcacaccgaggtgctgccgctctacggccggctgtcgtcggcggaccagcac
cgcgtcttccagccgtcaacgcaggcgggcgtgcgccgccgcatcgtgctcgccaccaac
gtcgccgagacgagcctcacggtgcccggcatcaagtacgtgatcgacgccggcaccgcc
cgcatctcgcgctacagcgtgcgctccaaggtgcaacggctccccatcgaggcgatctcg
caggcgtcggcgaaccagcgctcgggccgctccggccgcacgagtgacggcatcgcgatc
cgcctgtactcggaggaggacttcctccgccgtcccgagttcaccgagcccgagatcctc
cgcaccaacctcgcggccgtgatcctgcagatggtgtcgctcggcctcggcgacatcgcc
gcgttcccgttcctccagccgccggactcccgcggcatcaaggacggcgtcgacctcctc
accgagctcggcgccgtgatccgctcccccgacggcacgcccgccctcacccaggtgggc
cgcgacctgtcgcgcctgcccatcgacccgcggttcgcgcgcatggtcgtcgagtcgcgg
aagcacggcgtgagccgcgaggtgatgatcatcgtggccggcctcaccatccaggacgtg
cgcgagcgcccgctcgagaagcgcccgcaggccgaccagcagcacgcgcgcttcgtggat
ccgtcgagcgacttcatcaccctcctcaacctctggaaccacctcgaggagaaggaggcc
gagctctcctcgagcgcgttccgccgcatgtgcaaggccgagttcctcaactacgtccgc
gtccgcgagtggaaggacgtgttccgccagctgcgccagctcgcccgccccctcgacctc
gccatgaacgagcccaaggccgacccggacgggatccacaagtcgctgctcgccggcctc
ctctcccacatcggactgaaggacgcgcagaagaaggactacgtgggcgcccgccagtcg
cgcttcgtggtgttcccggggtcggcgctcgcgaagaagcagcccgacgcgatcatgagc
gccgagctcgtggagaccagccgcctgttcgcgcgcaccaacgcggccatcgacccggcg
tgggccgagcccatcgcgggcgggctcgtcaagcgcacccacagcgagccgcactgggag
aagaagcagggcgccaccgtcgcgtgggagcgcgtgacgctctacggcgtgccgatcgtg
ctgaagcgccgcgtgcagttctcccgcatcgaccccgcgtacgcgcgcgagctcttcatc
cggcacgcgctcgtcgagggcgactgggagtcgcagcaggccttcgaccgcgccaaccgc
cgcctgcgcgaagagctcgccgaggtggaggagcgcacgcgccgccgcgacatcctcaac
gacgacgaggccgtcttcgagttctacgacaagcggatcccgcgcgacgtcgcttccacg
cgcgccttcgagggctggtggaagaagcagcggcaggagacgcccgagctcctcacgatg
acggccgaggagctcgtagcctcggacgcgatggacgtcgacgaggccgcgttcccgccc
acctggcagcagggcgaccagcgcctctccctcacctaccgcttcgagccgggcgcgccc
gacgacggcgtgaccgtgcaggtgccgctcgcgctcctcgcgcgcctcagccccgcgggc
ttcgactggcaggtgcccggcatgcggcgcgacctcgtgaccgccatgatcaaggccctc
ccgaaggcgctgcggaagaacgtcgtgcccgccgccgactgggccgaccggctcctcgag
ggcctgcccgagccggatccgcagcaccccgtggccttcaccaccaccatcgcgggcctc
atcatgcggaaggcgcacgtgcgcgtcgccgacgacgacttcgacctcgaccggatcccc
gcgcacctgcgcatggcgttccgggtcgtcgacgagcgcggccgcgaggtggccgccggt
cgcgacctcaccgagctgcaggcgcgcctgtccagccgcgcgcgggacagcgtcgcgcgc
gccaccgcccggccggtcgagcgcgtcgccggtgcgaagggcccggccacgcgcggcatg
gagcgcacgggcctcaccacgtgggacctcgacgagctgccccgcttcgtcgacaccgcg
cagggcggcacgggcgacagcaggcacgtcatccgcgcgtatcccgcgctcgtcgacgag
gggtccaccgtcgcgatccgcctcatggcgaccgccgaggaccaggcccgcgcgatgccc
ggcggcgtgcggcgcctcctggtgctcgccatcgcgaacccctcggcctacgtgaagcag
cacctcacgagccaggagaagctgatgctcgcgacgagcccgtacccgaacgtgcaggcg
ctcttcgacgactgcctgctcgcgtgcatcgaccaggtgctcgagcgcgtggccccgggc
ggcgcgatctactcgaaggagctgttcgagacggcgcgcgaccgcgtctccggcgtcgtc
atggactcgatgttcgacaccgtggcgctcgtcaaccggatcctcacgggcgcgcgcgac
gccgagcgcgcgatcaagcaggccacgagcatgcagctcatcggcgcgctcacggacgcg
cgcgagcagctcgccggcctcgtgcacccgggcttcgtctcggcgaccggcctcgcccgg
ctccagcgcctgcccgcctacctctccggcctcacccaccgcgtgcagcgcctccccgac
cagcccgcgcgcgaccgcgcgtggatgaccgaggtgcagaaggcgaccgacctctaccgc
gaggccggcggcgtcatcccgtcggcgccgcacgcgcccgcgtcgctcgtgcacgcccgc
tggatgctcgaggagctgcgcctcagcctcttcgcccagcacctgccgacggccgagccg
gtgtcgctgcagcggatccggaaggtgctcgcgggctga
DBGET
integrated database retrieval system
